Releases: galaxyproject/training-material
Releases · galaxyproject/training-material
Release 2026 January 01
Monthly release of the GTN materials is now available on the archive.
📅 Events
🛤️ Learning pathways
📚 Tutorials
- Remove contamination and host reads (December 18, 2025)
- Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads (December 18, 2025)
- nb2workflow: Generating Galaxy Tools From Jupyter Notebooks (December 04, 2025)
❓ Faqs
- Minimum MAG length (December 18, 2025)
- Minimum MAG completeness percentage (December 18, 2025)
- Maximum MAG contamination percentage (December 18, 2025)
- CheckM2 vs CheckM (December 18, 2025)
- ANI threshold for dereplication (December 18, 2025)
- Average Nucleotide Identity (ANI): A Measure of Genomic Similarity (December 18, 2025)
🛠️ Workflows
🧑🏫 Contributors
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Release 2025 December 01
Monthly release of the GTN materials is now available on the archive.
📅 Events
📚 Tutorials
- Integrating InvenioRDM-compatible Repositories with Galaxy (November 06, 2025)
- Uploading Data to Zenodo from Galaxy (November 06, 2025)
- Best Practices for Citing Galaxy (November 06, 2025)
- Hybrid genome assembly - Nanopore and Illumina (November 03, 2025)
🎥 Recordings
❓ Faqs
- Get the workflow id (November 21, 2025)
- Downloading workflows (November 21, 2025)
- Force a tool to process collection jobs one by one instead of using the collection as input (November 18, 2025)
- Merge Reads for Co/Grouped Assembly (November 17, 2025)
🛠️ Workflows
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Release 2025 November 01
Monthly release of the GTN materials is now available on the archive.
📰 News
📅 Events
- Workshop on high-throughput sequencing data analysis with Galaxy (October 23, 2025)
- Galaxy Ecology training and collabroation fest (October 22, 2025)
- How can I analyse my texts, media, and data in the humanities and social sciences? (October 21, 2025)
- A practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy (October 13, 2025)
📚 Tutorials
- Audio data annotation with NEAL (Nature + Energy Audio labeler). (October 14, 2025)
- Creation of the labs in the different Galaxy instances for your community (October 04, 2025)
🧑🏫 Contributors
- @santinofaack (October 01, 2025)
- @annahenger (October 01, 2025)
- @abdullahkahraman (October 01, 2025)
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Release 2025 October 01
Monthly release of the GTN materials is now available on the archive.
📰 News
- We want you to help us organize the Galaxy Training Academy 2026 (September 12, 2025)
- GTN is now integrated with WorkflowHub (September 02, 2025)
📅 Events
- From data to discovery - Galaxy workshop at University of Graz (September 23, 2025)
- 2025 Galaxy Admin Training (Brno) (September 03, 2025)
- Introduction to Galaxy, the Open-Source Platform for FAIR Data Analysis (in German) (September 02, 2025)
🛤️ Learning pathways
📚 Tutorials
- OpenRefine Tutorial for researching cultural data (September 24, 2025)
- Creation of a Galaxy tutorial table for your community (September 17, 2025)
- Creation of resources listing Galaxy workflow for your community (September 17, 2025)
- Introduction to Digital Humanities in Galaxy (September 11, 2025)
❓ Faqs
- What is a Codex? (September 17, 2025)
- Creating a dataset collection with autobuild (September 16, 2025)
🛠️ Workflows
- Visualise amount of objects in Museum Collection (September 24, 2025)
- Argo-Glider Nitrate QCV (September 16, 2025)
- Introduction to DH in Galaxy (September 11, 2025)
🧑🏫 Contributors
- @uwwint (September 01, 2025)
- @sebastian-preissl (September 01, 2025)
- @martindemko (September 01, 2025)
🏢 Organisations
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2025-09-18
Merge pull request #6363 from galaxyproject/Deeptivarshney-patch-1 Fix broken links for installation steps
Release 2025 September 01
Monthly release of the GTN materials is now available on the archive.
📰 News
📚 Tutorials
- Indexing and profiling microbes with MetaSBT (August 25, 2025)
- Identifing Survival Markers of Brain tumor with Flexynesis (August 13, 2025)
- Modeling Breast Cancer Subtypes with Flexynesis (August 13, 2025)
- Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools (August 11, 2025)
- Unsupervised Analysis of Bone Marrow Cells with Flexynesis (August 10, 2025)
- Prepare Data from CbioPortal for Flexynesis Integration (August 10, 2025)
🛠️ Workflows
- Final - Survival Markers of Lower Grade (August 13, 2025)
- Final - Modeling Breast Cancer Subtypes + TABPFN (August 13, 2025)
- Electrophoresis-Gel-Bands-Image-Analysis (August 11, 2025)
- Hi-C Analysis with Galaxy Tutorial Workflow (August 11, 2025)
- Final - Unsupervised Analysis of Bone Marrow Cells (August 10, 2025)
- Flexynesis - get data from Cbioportal (August 10, 2025)
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Release 2025 August 01
Monthly release of the GTN materials is now available on the archive.
📰 News
- Scaling Up Hands-On Bioinformatics Training with TIAAS -- An Open University Perspective (July 03, 2025)
- Enhancing Scientific Training: The Galaxy Training Network's Role in the ELIXIR Training Life-Cycle (July 01, 2025)
📅 Events
🛤️ Learning pathways
📚 Tutorials
- MGnify v5.0 Amplicon Pipeline (July 30, 2025)
- Training Custom YOLO Models for Segmentation of Bioimages (July 25, 2025)
❓ Faqs
🛠️ Workflows
- MGnify amplicon summary tables (July 30, 2025)
- MGnify's amplicon pipeline v5.0 - rRNA prediction (July 30, 2025)
- MGnify's amplicon pipeline v5.0 - Quality control SE (July 30, 2025)
- MGnify's amplicon pipeline v5.0 - Quality control PE (July 30, 2025)
- MGnify's amplicon pipeline v5.0 - ITS (July 30, 2025)
- MGnify's amplicon pipeline v5.0 (July 30, 2025)
- MAPseq to ampvis2 (July 30, 2025)
- YOLO training and segmentation workflow (July 25, 2025)
🧑🏫 Contributors
💰 Grants
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Release 2025 July 01
Monthly release of the GTN materials is now available on the archive.
📰 News
📚 Tutorials
- Comparison of two annotation tools - Helixer and Braker3 (June 20, 2025)
- Phylodiversity analysis quick tutorial (June 06, 2025)
- Life Traits Ecoregionalization workflow (June 02, 2025)
- Taxonomic Analysis of eDNA (June 02, 2025)
❓ Faqs
🛠️ Workflows
- Comparison of two annotation tools: Helixer and Braker3 (June 20, 2025)
- Taxonomic Analysis of eDNA (June 02, 2025)
🧑🏫 Contributors
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Release 2024 December 01
Monthly release of the GTN materials is now available on the archive.
📅 Events
- 🖖🏾 SPOC II: the Write-a-Than (November 26, 2024)
- Galaxy at Congresso Brasileiro de Biologia Evolutiva (November 12, 2024)
📚 Tutorials
- Updating tool versions in a tutorial (November 29, 2024)
- Create a subdomain for your community on UseGalaxy.eu (November 27, 2024)
- Tracking of mitochondria and capturing mitoflashes (November 20, 2024)
- Running the GTN website online using GitHub CodeSpaces (November 11, 2024)
- Alternative Celery Deployment for Galaxy (November 07, 2024)
- Single Cell Publication - Data Analysis (November 07, 2024)
- Single Cell Publication - Data Plotting (November 07, 2024)
❓ Faqs
- Add Toolshed category to a tool (November 13, 2024)
- Supporting Tutorial Mode (GTN-in-Galaxy) in a tutorial (November 07, 2024)
🛠️ Workflows
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Release 2024 November 01
Monthly release of the GTN materials is now available on the archive.