support for eb --check-versions (WIP) #2386

boegel · 2018-01-30T22:10:46Z

This adds support to query upstream for available software versions.

Example usage:

$ eb --check-versions scipy-0.19.0-intel-2016b-Python-3.5.2.eb
== temporary log file in case of crash /tmp/eb-SuKBd8/easybuild-mH_iIW.log

* available software versions for scipy:
  (based on /Users/kehoste/work/easybuild-easyconfigs/easybuild/easyconfigs/s/scipy/scipy-0.19.0-intel-2016b-Python-3.5.2.eb)
	* 0.8.0
	* 0.9.0
	* 0.10.0
	* 0.10.1
	* 0.11.0
	* 0.12.0
	* 0.12.1
	* 0.13.0
	* 0.13.1
	* 0.13.2
	* 0.13.3
	* 0.14.0
	* 0.14.1
	* 0.15.0
	* 0.15.1
	* 0.16.0
	* 0.16.1
	* 0.17.0
	* 0.17.1
	* 0.18.0rc2
	* 0.18.0
	* 0.18.1
	* 0.19.0
	* 0.19.1
	* 1.0.0b1
	* 1.0.0rc1
	* 1.0.0rc2
	* 1.0.0

== Temporary log file(s) /tmp/eb-SuKBd8/easybuild-mH_iIW.log* have been removed.
== Temporary directory /tmp/eb-SuKBd8 has been removed.

…custom ways of determining available versions

…--check-versions

…e URLs

…_url, to control order

…rsions in correct order

…sions

… source URL

boegelbot · 2018-01-30T23:13:25Z

Travis test report: 1/10 runs failed - see https://travis-ci.org/easybuilders/easybuild-framework/builds/335370380

Only showing partial log for 1st failed test suite run 1634.3;
full log at https://travis-ci.org/easybuilders/easybuild-framework/jobs/335370383

...
Receiving objects: 100% (26612/26612)   
Receiving objects: 100% (26612/26612), 8.01 MiB | 21.02 MiB/s, done.
Resolving deltas:   0% (0/19520)   
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Resolving deltas: 100% (19520/19520), done.

travis_time:end:067c1e5f:start=1517350345270200624,finish=1517350347690866521,duration=2420665897
�[0K$ cd easybuilders/easybuild-framework
travis_time:start:0089b6a1
�[0K$ git fetch origin +refs/pull/2386/merge:
remote: Counting objects: 115, done.�[K
remote: Compressing objects:   3% (1/31)   �[K
remote: Compressing objects:   6% (2/31)   �[K
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remote: Compressing objects: 100% (31/31)   �[K
remote: Compressing objects: 100% (31/31), done.�[K
remote: Total 115 (delta 92), reused 106 (delta 84), pack-reused 0�[K
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Receiving objects: 100% (115/115), 14.37 KiB | 14.37 MiB/s, done.
Resolving deltas:   0% (0/92)   
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Resolving deltas: 100% (92/92)   
Resolving deltas: 100% (92/92), completed with 26 local objects.
From https://github.com/easybuilders/easybuild-framework
 * branch              refs/pull/2386/merge -> FETCH_HEAD

travis_time:end:0089b6a1:start=1517350347697347101,finish=1517350348278965000,duration=581617899
�[0K$ git checkout -qf FETCH_HEAD
travis_fold:end:git.checkout
�[0Ktravis_fold:start:apt
�[0K�[33;1mInstalling APT Packages (BETA)�[0m
$ export DEBIAN_FRONTEND=noninteractive
travis_time:start:08d28400
�[0K$ sudo -E apt-get -yq update &>> ~/apt-get-update.log

travis_time:end:08d28400:start=1517350348324330377,finish=1517350360470639069,duration=12146308692
�[0Ktravis_time:start:074dd4f4
�[0K$ sudo -E apt-get -yq --no-install-suggests --no-install-recommends --force-yes install tcl8.5 python-setuptools git mercurial time
Reading package lists...
Building dependency tree...
Reading state information...
time is already the newest version (1.7-24).
The following additional packages will be installed:
  git-man libtcl8.5 mercurial-common
Suggested packages:
  git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk
  gitweb git-cvs git-mediawiki git-svn qct kdiff3 | kdiff3-qt | kompare | meld
  | tkcvs | mgdiff python-mysqldb python-pygments tcl-tclreadline
The following NEW packages will be installed:
  libtcl8.5 mercurial mercurial-common python-setuptools tcl8.5
The following packages will be upgraded:
  git git-man
2 upgraded, 5 newly installed, 0 to remove and 66 not upgraded.
Need to get 8,980 kB of archives.
After this operation, 13.7 MB of additional disk space will be used.
Get:1 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libtcl8.5 amd64 8.5.15-2ubuntu1 [684 kB]
Get:2 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 mercurial-common all 2.8.2-1ubuntu1.3 [1,520 kB]
Get:3 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 mercurial amd64 2.8.2-1ubuntu1.3 [41.1 kB]
Get:4 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 python-setuptools all 3.3-1ubuntu2 [230 kB]
Get:5 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 tcl8.5 amd64 8.5.15-2ubuntu1 [13.9 kB]
Ign:6 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main amd64 git amd64 1:2.16.1-0ppa1~ubuntu14.04.1
Ign:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main i386 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
Ign:6 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main amd64 git amd64 1:2.16.1-0ppa1~ubuntu14.04.1
Ign:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main amd64 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
Err:6 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main amd64 git amd64 1:2.16.1-0ppa1~ubuntu14.04.1
  Could not connect to ppa.launchpad.net:80 (91.189.95.83), connection timed out
Err:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main i386 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
  Unable to connect to ppa.launchpad.net:http:
Err:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main amd64 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
  Unable to connect to ppa.launchpad.net:http:
Err:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main i386 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
  Unable to connect to ppa.launchpad.net:http:
Err:7 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty/main i386 git-man all 1:2.16.1-0ppa1~ubuntu14.04.1
  Unable to connect to ppa.launchpad.net:http:
Fetched 2,488 kB in 10s (248 kB/s)
W: --force-yes is deprecated, use one of the options starting with --allow instead.
E: Failed to fetch http://ppa.launchpad.net/git-core/ppa/ubuntu/pool/main/g/git/git_2.16.1-0ppa1~ubuntu14.04.1_amd64.deb  Could not connect to ppa.launchpad.net:80 (91.189.95.83), connection timed out

E: Failed to fetch http://ppa.launchpad.net/git-core/ppa/ubuntu/pool/main/g/git/git-man_2.16.1-0ppa1~ubuntu14.04.1_all.deb  Unable to connect to ppa.launchpad.net:http:

E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?

travis_time:end:074dd4f4:start=1517350360478176786,finish=1517350371321443943,duration=10843267157
�[0Ktravis_fold:start:apt-get.diagnostics
�[0K�[31;1mapt-get install failed�[0m
$ cat ~/apt-get-update.log
Ign:1 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty InRelease
Hit:2 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates InRelease
Hit:3 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-backports InRelease
Hit:4 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty Release
Ign:5 http://dl.google.com/linux/chrome/deb stable InRelease
Hit:8 http://dl.google.com/linux/chrome/deb stable Release
Ign:6 http://toolbelt.heroku.com/ubuntu ./ InRelease
Hit:9 http://security.ubuntu.com/ubuntu trusty-security InRelease
Hit:10 http://ppa.launchpad.net/chris-lea/redis-server/ubuntu trusty InRelease
Hit:11 http://toolbelt.heroku.com/ubuntu ./ Release
Hit:13 https://download.docker.com/linux/ubuntu trusty InRelease
Ign:15 http://ppa.launchpad.net/couchdb/stable/ubuntu trusty InRelease
Hit:16 https://dl.hhvm.com/ubuntu trusty InRelease
Hit:18 http://ppa.launchpad.net/git-core/ppa/ubuntu trusty InRelease
Hit:19 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu trusty InRelease
Hit:20 https://packagecloud.io/computology/apt-backport/ubuntu trusty InRelease
Hit:21 http://ppa.launchpad.net/pollinate/ppa/ubuntu trusty InRelease
Hit:22 https://packagecloud.io/github/git-lfs/ubuntu trusty InRelease
Hit:23 http://ppa.launchpad.net/webupd8team/java/ubuntu trusty InRelease
Hit:24 https://packagecloud.io/rabbitmq/rabbitmq-server/ubuntu trusty InRelease
Hit:25 http://ppa.launchpad.net/couchdb/stable/ubuntu trusty Release
Err:27 http://repo.mongodb.org/apt/ubuntu trusty/mongodb-org/3.4 InRelease
  Could not connect to repo.mongodb.org:80 (13.33.160.183), connection timed out
Hit:28 http://apt.postgresql.org/pub/repos/apt trusty-pgdg InRelease
Get:7 http://dl.bintray.com/apache/cassandra 39x InRelease [3,168 B]
Fetched 3,168 B in 10s (304 B/s)
Reading package lists...
W: http://ppa.launchpad.net/couchdb/stable/ubuntu/dists/trusty/Release.gpg: Signature by key 15866BAFD9BCC4F3C1E0DFC7D69548E1C17EAB57 uses weak digest algorithm (SHA1)
W: Failed to fetch http://repo.mongodb.org/apt/ubuntu/dists/trusty/mongodb-org/3.4/InRelease  Could not connect to repo.mongodb.org:80 (13.33.160.183), connection timed out
W: Some index files failed to download. They have been ignored, or old ones used instead.
travis_fold:end:apt-get.diagnostics
�[0K
�[31;1mThe command "sudo -E apt-get -yq --no-install-suggests --no-install-recommends --force-yes install tcl8.5 python-setuptools git mercurial time" failed and exited with 100 during .�[0m

Your build has been stopped.

(bleep, bloop, I'm just a bot, please talk to my owner @boegel if you notice you me acting stupid)

akesandgren · 2019-04-16T10:09:03Z

@boegel Care to fix the conflicts?

boegel added 16 commits September 20, 2017 19:12

add initial logic for --check-versions

bf7c824

introduce 'check_versions' method in EasyBlock to allow implementing …

2695baa

…custom ways of determining available versions

don't skip easyconfigs for which a module is already available under …

fdd76c7

…--check-versions

Merge branch 'develop' into check_versions

f973ef9

add initial support for determining available versions based on sourc…

28f284a

…e URLs

Merge branch 'develop' into check_versions

7d14db1

first working implementation of --check-versions

4432833

use list of tuples for known_url_types in check_software_versions_via…

8aebf18

…_url, to control order

Merge branch 'develop' into check_versions

93e9bff

flesh out mk_src_regex function

be3b00b

Merge branch 'develop' into check_versions

4f59301

look for matches with different extensions, produce list of unique ve…

071ae81

…rsions in correct order

use pkg_resources.parse_version rather than StrictVersion to sort ver…

4a31e34

…sions

add support for determining software version via directory listing at…

f85da80

… source URL

WIP

61fc56a

Merge branch 'develop' into check_versions

10fa5b2

boegel added the feature label Jan 30, 2018

boegel added this to the 3.x milestone Jan 30, 2018

boegel modified the milestones: 3.x, 4.x Feb 20, 2020

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support for eb --check-versions (WIP) #2386

support for eb --check-versions (WIP) #2386

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boegel commented Jan 30, 2018

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akesandgren commented Apr 16, 2019

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support for eb --check-versions (WIP) #2386

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boegel commented Jan 30, 2018

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akesandgren commented Apr 16, 2019

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