Add a architecture env variable to the user subdir module path.#2330

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akesandgren wants to merge 112 commits intoeasybuilders:developfrom

akesandgren:add-arch_env-to-subdir-user-module-path

Commits on Oct 21, 2017

Add a architecture env variable to the user subdir module path.
akesandgren
committed

Commits on Feb 7, 2018

Add framework support for foss-like toolchain with Spectrum MPI

Alan O'Cais
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akesandgren
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Update gsolf.py

ocaisa
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akesandgren
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Update gsmpi.py

ocaisa
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akesandgren
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Update spectrummpi.py

ocaisa
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akesandgren
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review-pr before submitting new-pr

migueldiascosta
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akesandgren
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use det_easyconfig_paths

migueldiascosta
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akesandgren
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new option --preview-pr

migueldiascosta
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akesandgren
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reduce code duplication

migueldiascosta
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akesandgren
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raise error if no PR # or easyconfig path is specified

migueldiascosta
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akesandgren
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avoid code repetition

migueldiascosta
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akesandgren
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fix style

migueldiascosta
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akesandgren
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redefine no_ec_opts and new_update_preview_pr

migueldiascosta
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akesandgren
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use original determined paths

migueldiascosta
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akesandgren
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fix use of --inject-checksums on bundles that do not have a 'sources' spec

boegel
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akesandgren
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inject single checksum for extensions on a single line (& omit filename)

boegel
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akesandgren
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avoid hardcoding name/version of extension that matches parent software name/version under --inject-checksums, use name/version parameters instead

boegel
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akesandgren
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enhance test for --inject-checksums to also cover fixed bugs

boegel
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akesandgren
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fixes for using toy as extension for toy (inception!)

boegel
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akesandgren
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don't blindly change into install dir in sanity_check_step for extensions (to avoid trouble under --module-only)

boegel
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akesandgren
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fix indentation

migueldiascosta
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akesandgren
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shorten long line

migueldiascosta
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akesandgren
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if no_ec_opts should be if any(no_ec_opts)

migueldiascosta
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akesandgren
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add test

migueldiascosta
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akesandgren
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flesh out find_extension function, hoist dict with extract commands into a constant

boegel
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akesandgren
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--new-pr & co don't strictly require easyconfigs to be specified (e.g. for patches, removing easyconfigs, ...)

boegel
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akesandgren
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add missing 'any'

boegel
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akesandgren
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add support for using self.start_dir rather than using self.cfg['start_dir']

boegel
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akesandgren
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fix error message when 'gv' Python package is not available

boegel
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akesandgren
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first implementation of support for pre- and post-step hooks

boegel
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akesandgren
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only load implementation of hooks once

boegel
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akesandgren
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add tests for load_hooks and find_hook functions

boegel
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akesandgren
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add test for --hooks option

boegel
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akesandgren
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install paramiko version < 2.4.0 for Python 2.6 in Travis config

boegel
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akesandgren
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add support for 'exts_default_options' easyconfig parameter

boegel
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akesandgren
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enhance test according to @wpoely86's suggestion

boegel
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akesandgren
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take exts_default_options easyconfig parameter into account for --inject-checksums

boegel
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akesandgren
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enhance test for --inject-checksums to check whether exts_default_options is taken into account

boegel
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akesandgren
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rename 'find_hook' to 'find_step_hook' and add more generic 'find_hook' function

boegel
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akesandgren
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implement run_hook function, collapse find_hook and find_step_hook into single find_hook function

boegel
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akesandgren
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use run_hook to run pre- and post-step hooks

boegel
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akesandgren
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also implement start and end hooks

boegel
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akesandgren
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disable log rotation since it's broken anyway

boegel
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akesandgren
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avoid duplicate logging of executed commands under --debug

boegel
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akesandgren
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skip testing of --preview-pr if not GitHub token is available

boegel
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akesandgren
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fix order in import statement

boegel
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akesandgren
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flesh out hook support into easybuild.tools.hooks module

boegel
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akesandgren
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no need to resolve --hooks path or make it a build option, but do make sure specified path exists

boegel
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akesandgren
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verify defined hooks and produce error if unknown hooks are defined

boegel
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akesandgren
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Allow use of `start_dir` in extensions

wpoely86
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akesandgren
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Fix bug: don't blind use the `start_dir` from the parent

wpoely86
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akesandgren
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Use .start_dir

wpoely86
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akesandgren
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Add comment to clarify the situation

wpoely86
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akesandgren
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Fix typo

wpoely86
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akesandgren
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Make @boegel happy

wpoely86
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akesandgren
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Change to RPATH injection. Add %installdir/lib, %installdir/lib64 and $ORIGIN to RPATH. This works much better with shared libraries in non-standard locations, esp. python packages

John Donners
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akesandgren
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Added comma

John Donners
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akesandgren
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Adjusted tests to new rpath_args.py

John Donners
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akesandgren
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Include paths are now passed down from easyblock.py, where the installdir is defined. Shuffled tests to match the changed rpath mechanism.

John Donners
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akesandgren
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Changed accordingly

John Donners
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akesandgren
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fix remarks by @damianam

boegel
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akesandgren
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make verify_hook issue suggestions for close matching hook names in error message for unknown hooks

boegel
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akesandgren
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add support for --avail-hooks

boegel
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akesandgren
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Fixed typo

John Donners
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akesandgren
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Improved python code

John Donners
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akesandgren
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enhance test_toy_rpath to make sure correct list of rpath filter paths is used

boegel
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akesandgren
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re-instate $ORIGIN/../lib and $ORIGIN/../lib64 in RPATH locations injected by RPATH compiler wrapper

boegel
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akesandgren
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add 'hooks' as last named argument to 'build_and_install_software' function

boegel
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akesandgren
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add constants for 'pre_', 'post_' and '_hook' prefix/suffix of hook names

boegel
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akesandgren
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prepare release notes for eb350

migueldiascosta
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akesandgren
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Add giolfc toolchain.
akesandgren
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clean up release notes for EasyBuild v3.5.0

boegel
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akesandgren
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bump version to v3.5.0

boegel
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akesandgren
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include URLs for hooks docs

boegel
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akesandgren
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fix repo references in install develop script

migueldiascosta
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akesandgren
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include #22360 in v3.5.0 release notes

boegel
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akesandgren
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fix release date for EasyBuild v3.5.0

boegel
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akesandgren
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bump version to v3.5.1dev

boegel
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akesandgren
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First attempt at support for new Environment Modules 4

ebagrenrut
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akesandgren
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Corrected logic around new MAX_VERSION setting for ModulesTool. Removed the hastily-named EnvironmentModules4 class until there is a better implementation. Style corrections.

ebagrenrut
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akesandgren
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Removed superfluous MAX_VERSION from EnvironmentModulesTcl

ebagrenrut
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Added new class EnvironmentModules(EnvironmentModulesTcl) to support EnvironmentModules 4.0+

ebagrenrut
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akesandgren
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In EvironmentModules class, use os.path.join when setting COMMAND instead of string concatenation. Add a second blank line after EnvironmentModules class to match style of other classes.

ebagrenrut
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akesandgren
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install SQLAlchemy < 1.2.0 with Python 2.6 in Travis config

boegel
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akesandgren
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also test against Modules v4

boegel
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akesandgren
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When setting COMMAND in EnvironmentModules class, use os.getenv instead of os.environment when getting value of MODULESHOME. The latter results in a traceback if MODULESHOME is undefined.

ebagrenrut
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akesandgren
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When setting COMMAND in EnvironmentModules class, provide a fallback value in case MODULESHOME is undefined

ebagrenrut
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akesandgren
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don't pass empty argument to 'module purge'

boegel
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In test_avail method of ModulesTest class, handle EnvironmentModules (>=4.0) like EnvironmentModulesTcl (<=1.293)

ebagrenrut
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akesandgren
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In test_avail method of ModulesTest class, handle EnvironmentModules (>=4.0) like EnvironmentModulesTcl (<=1.293)

ebagrenrut
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akesandgren
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import EnvironmentModules class

ebagrenrut
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akesandgren
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EnvironmentModules is a subclass of EnvironmentModulesTcl, but Modules 4+ behaves similarly to ModulesC, so also append GCCcore/6.2.0 if we are an instance of EnvironmentModules

ebagrenrut
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akesandgren
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update test_load, Modules v4.0 does not reload already loaded modules (+ break up long comment)

boegel
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disable testing of bootstrap script when Modules v4 is used as modules tool

boegel
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bump copyright to 2018 in license headers

boegel
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akesandgren
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fix remark

boegel
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akesandgren
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Make code in `tools/job/gc3pie.py` forward-compatible with GC3Pie 2.5

riccardomurri
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akesandgren
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prepare release notes for eb351

migueldiascosta
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akesandgren
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bump version to 3.5.1

boegel
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akesandgren
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bump version to 3.5.2dev

boegel
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Allow basic compiler modulenames to be specified as keys in optarch.

bartoldeman
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akesandgren
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Fix and clarify comments.

bartoldeman
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Shuffle code a little to only test once for GENERIC optarch.

bartoldeman
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update bootstrap script to be compatible with Modules v4

boegel
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akesandgren
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also enable debugging of last part of stage2 if $EASYBUILD_BOOTSTRAP_DEBUG is defined

boegel
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akesandgren
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bump version of bootstrap script to 20180117.01

boegel
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akesandgren
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check whether $MODULESHOME is defined to discriminate between EnvironmentModules and EnvironmentModulesTcl modules tool

boegel
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akesandgren
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fix checksum for bootstrap script in Travis config

boegel
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akesandgren
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distinguish between EnvironmentModules and EnvironmentModulesTcl if command is modulecmd.tcl

xdelaruelle
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akesandgren
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bump version of bootstrap script to 20180201.01

xdelaruelle
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Use {RUNTIME_ENV::SOME_ENV_VAR} instead of subdir_arch_env.
akesandgren
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Simplify the code for handling {RUNTIME_ENV::SOME_ENV_VAR} in user_modpath.
akesandgren
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