{lang}[GCCcore/8.2.0] Python v2.7.15 by boegel · Pull Request #7821 · easybuilders/easybuild-easyconfigs

boegel · 2019-03-06T15:47:40Z

(created using eb --new-pr)

boegel · 2019-03-06T17:28:15Z

@vanzod @Micket As discussed during the conf call: which additional Python packages should be consider including as well?

wheel is already there, I added pytest already myself.

I guess Jinja2 (+ deps) is a good candidate. Anything else?

Micket · 2019-03-06T20:00:25Z

Maybe

Pylint
psutil, psrecord
lxml
Sphinx

There are also lots deps from various bundles that could be included as well

ASE deps: MarkupSafe, Jinja2, Wekzeug, Click, itsdangerous, Flask
Tensorflow deps: protobuf-python, absl-py, astor, gast, grpcio, Markdown, termcolor, Werkzeug
Sphinx deps (if we don't include all of sphinx): packaging, MarkupSafe, Pygments, imagesize, Docutils, Jinja2, snowballstemmer, Babel, typing
pyparsing, Cheetah

boegel · 2019-03-07T12:17:43Z

@Micket I'd only include additional extensions if they're common dependencies for multiple other easyconfigs (Jinja2 certainly fits, Click).
Sphinx also makes sense, I guess pylint does too (although it's not a common dep).

Not sure about psutil & psrecord, any reason you'd include those?

lxml implies also including libxml2 and libxslt as dependencies.

Not a big fan of including Flask and all required packages (since it's a framework for webapps).

Most of the others you mention are only relevant for one or a handful at best of applications?

You also mentioned pkgconfig (the Python packages), that should also be included?

Micket · 2019-03-07T19:26:00Z

@boegel Yeah I just looked at some packages that were used by several other bundles. psutil was included in a 9 bundles (with recent easyconfigs). psrecord wasn't (i incorrectly thought it was).
I was basically just grep foo -R in the easyconfigs tree to see if there was multiple matches.

I suppose pkgconfig is unnecessary, as it's "just" used during configurations, additional pythonpaths won't matter.

I don't really have any strong feelings about this, but, at least if it doesn't bring any additional deps, why not?

boegel · 2019-03-08T20:11:13Z

One more to definitely include: future.

…with GCCcore/8.2.0 toolchain

Micket · 2019-03-15T10:44:39Z

Test report by @Micket
FAILED
Build succeeded for 2 out of 4 (4 easyconfigs in this PR)
hebbe-s1.int.private - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz, Python 2.7.14
See https://gist.github.com/1c2ad023901dd177c4402900e90fee9c for a full test report.

ignore this, this was just my fault.

boegel · 2019-03-15T10:46:19Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node3140.skitty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/17b1b9e8cc9560d448e150041d84fe3d for a full test report.

boegel · 2019-03-15T10:51:17Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2523.golett.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 2.7.5
See https://gist.github.com/6d8e1f6e8ef3b19385dab922ae1ab978 for a full test report.

boegel · 2019-03-15T10:53:37Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2044.delcatty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/aa4318e68182428629c3efeae139860c for a full test report.

akesandgren · 2019-03-15T11:28:19Z

Test report by @akesandgren
SUCCESS
Build succeeded for 6 out of 6 (4 easyconfigs in this PR)
b-an03.hpc2n.umu.se - Linux ubuntu 16.04, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 2.7.12
See https://gist.github.com/44c20c13a1e8b58facf73f1db5bc1ba5 for a full test report.

verdurin · 2019-03-15T12:12:52Z

Test report by @verdurin
FAILED
Build succeeded for 4 out of 8 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/daf2a3e791aee69b3a4666070d34c11d for a full test report.

Micket · 2019-03-15T12:15:12Z

Test report by @Micket
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
vera-c1 - Linux centos linux 7.6.1810, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/c90ee72e49b2c6d999302da3cb5095c5 for a full test report.

boegel · 2019-03-15T12:42:56Z

@Micket Forgot --robot with first attempt?

@verdurin Can you explain this issue?

Failed to create directory /dev/shm/ncurses/6.1/GCCcore-8.2.0: [Errno 13] Permission denied: '/dev/shm/ncurses/6.1/GCCcore-8.2.0'

smoors · 2019-03-15T13:51:24Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic425 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/a52d74463b72b5baa84a25e94e9ea54c for a full test report.

verdurin · 2019-03-15T13:58:54Z

Test report by @verdurin
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/0a7e227548d2c512bbeae1f22ea13e38 for a full test report.

boegel · 2019-03-15T14:15:46Z

@verdurin Does this ring any bells for you?

== 2019-03-15 13:58:49,504 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
    from . import _bcrypt
ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,

smoors · 2019-03-15T14:34:54Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic75 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz, Python 2.7.5
See https://gist.github.com/bc0cfc8372479a47697649fe0d0f238d for a full test report.

smoors · 2019-03-15T14:36:37Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic151 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz, Python 2.7.5
See https://gist.github.com/ff114fd453eeccd0362554eab941da6a for a full test report.

verdurin · 2019-03-15T14:48:01Z

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/83bd8b9bb02a9441f2beb03884534260 for a full test report.

verdurin · 2019-03-15T14:49:37Z

@verdurin Does this ring any bells for you?

== 2019-03-15 13:58:49,504 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
    from . import _bcrypt
ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,

A local anomaly, now fixed.

vanzod · 2019-03-15T15:55:31Z

Test report by @vanzod
SUCCESS
Build succeeded for 6 out of 6 (4 easyconfigs in this PR)
cermis - Linux debian 9.8, Intel(R) Xeon(R) CPU X5670 @ 2.93GHz, Python 2.7.13
See https://gist.github.com/ef45f75961aebc1be9e1ebbda0eb3c65 for a full test report.

vanzod · 2019-03-15T16:12:52Z

Going in, thanks @boegel!

migueldiascosta · 2019-03-15T23:44:53Z

Test report by @migueldiascosta
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/3259ca2d26f27d1bda2f926bedc6961b for a full test report.

{lang}[GCCcore/8.2.0] Python v2.7.15

0c3acfb

boegel added the update label Mar 6, 2019

boegel changed the title ~~{lang}[GCCcore/8.2.0] Python v2.7.15~~ {lang}[GCCcore/8.2.0] Python v2.7.15 (WIP) Mar 6, 2019

boegel added this to the next release (3.8.2) milestone Mar 6, 2019

boegel mentioned this pull request Mar 14, 2019

{lang}[GCCcore/8.2.0] Python v3.7.2 #7898

Merged

add Jinja2, Sphinx, Click psutil, future extensiosn to Python 2.7.15 …

6c9b4b5

…with GCCcore/8.2.0 toolchain

vanzod approved these changes Mar 15, 2019

View reviewed changes

vanzod merged commit 639edb5 into easybuilders:develop Mar 15, 2019

boegel deleted the 20190306164729_new_pr_Python2715 branch March 15, 2019 16:22

boegel changed the title ~~{lang}[GCCcore/8.2.0] Python v2.7.15 (WIP)~~ {lang}[GCCcore/8.2.0] Python v2.7.15 Mar 15, 2019

boegel mentioned this pull request Apr 3, 2019

EasyBuild v4.0 easybuilders/easybuild#447

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18 tasks

boegel mentioned this pull request Apr 30, 2019

add easyconfig for 'Python-core' built with GCCcore which can be used as a build dep #5072

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