{bio}[foss/2023b] ichorCNA v0.5.1-20240609 w/ R 4.4.1

easybuild/easyconfigs/i/ichorCNA/ichorCNA-0.5.1-20240609-foss-2023b-R-4.4.1.eb

@@ -0,0 +1,33 @@
+# The project has been moved to https://github.com/GavinHaLab/ichorCNA
+# Original homepage: https://github.com/broadinstitute/ichorCNA
+# Update: Emik Lin (HKUMed CPOS)
+easyblock = 'RPackage'
+
+name = 'ichorCNA'
+local_commit = 'e5a6b30'
+# see DESCRIPTION to determine version,
+# but add date stamp of commit since version is not always bumped
+version = '0.5.1-20240609'
+versionsuffix = '-R-%(rver)s'
+
+homepage = 'https://github.com/GavinHaLab/ichorCNA'
+description = """ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ultra-low-pass whole
+genome sequencing"""
+
+source_urls = ['https://github.com/GavinHaLab/ichorCNA/archive/']
+sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}]
+checksums = ['6fba1d7527e78615f1935d6d6a82e91be4705a5d95bd027226449be33b4903b1']
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+dependencies = [
+    ('R', '4.4.1'),
+    ('R-bundle-Bioconductor', '3.19', versionsuffix),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': [name],
+}
+
+moduleclass = 'bio'