{bio}[GCCcore/13.2.0] ANNOVAR v20250302

[PhoenixEmik]

(created using eb --new-pr)

[github-actions]

Updated software ANNOVAR-20250302-GCCcore-13.2.0.eb

Diff against ANNOVAR-20200607-GCCcore-13.2.0.eb

easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-13.2.0.eb b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
index af1569479a..5cdb22e58e 100644
--- a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
@@ -4,7 +4,7 @@
 easyblock = 'Tarball'
 
 name = 'ANNOVAR'
-version = '20200607'  # version reported by `annotate_variation.pl -h`
+version = '20250302'  # version reported by `annotate_variation.pl -h`
 
 homepage = 'http://annovar.openbioinformatics.org/en/latest/'
 description = """ANNOVAR is an efficient software tool to utilize update-to-date information
@@ -19,7 +19,7 @@ via http://www.openbioinformatics.org/annovar/annovar_download_form.php
 rename after download to %(namelower)s-%(version)s.tar.gz
 """
 sources = ['%(namelower)s-%(version)s.tar.gz']
-checksums = ['4061af3f2cc8f3d4d8187986c3d468a4b6ae145eec1858e85c7cd1059debb8ed']
+checksums = ['d32e18747eb3eafdc4889397483fbd9d15ac8aeefda14ef17442ae54dd192f57']
 
 dependencies = [('Perl', '5.38.0')]
 

Diff against ANNOVAR-20200607-GCCcore-12.3.0.eb

easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-12.3.0.eb b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
index 60f3b55e5d..5cdb22e58e 100644
--- a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
@@ -1,16 +1,17 @@
 # J. Sassmannshausen /NHS/GSTT: toolchain updated to GCCcore-11.2
+# Update: Petr Král (INUITS)
 
 easyblock = 'Tarball'
 
 name = 'ANNOVAR'
-version = '20200607'  # version reported by `annotate_variation.pl -h`
+version = '20250302'  # version reported by `annotate_variation.pl -h`
 
 homepage = 'http://annovar.openbioinformatics.org/en/latest/'
 description = """ANNOVAR is an efficient software tool to utilize update-to-date information
 to functionally annotate genetic variants detected from diverse genomes (including human
 genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others)."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 download_instructions = """
 Registration required for download
@@ -18,9 +19,9 @@ via http://www.openbioinformatics.org/annovar/annovar_download_form.php
 rename after download to %(namelower)s-%(version)s.tar.gz
 """
 sources = ['%(namelower)s-%(version)s.tar.gz']
-checksums = ['4061af3f2cc8f3d4d8187986c3d468a4b6ae145eec1858e85c7cd1059debb8ed']
+checksums = ['d32e18747eb3eafdc4889397483fbd9d15ac8aeefda14ef17442ae54dd192f57']
 
-dependencies = [('Perl', '5.36.1')]
+dependencies = [('Perl', '5.38.0')]
 
 modextrapaths = {'PATH': ''}
 

Diff against ANNOVAR-20200607-GCCcore-11.2.0-Perl-5.34.0.eb

easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-11.2.0-Perl-5.34.0.eb

diff --git a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-11.2.0-Perl-5.34.0.eb b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
index 4e15a4d330..5cdb22e58e 100644
--- a/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20200607-GCCcore-11.2.0-Perl-5.34.0.eb
+++ b/easybuild/easyconfigs/a/ANNOVAR/ANNOVAR-20250302-GCCcore-13.2.0.eb
@@ -1,29 +1,29 @@
 # J. Sassmannshausen /NHS/GSTT: toolchain updated to GCCcore-11.2
+# Update: Petr Král (INUITS)
 
 easyblock = 'Tarball'
 
 name = 'ANNOVAR'
-version = '20200607'  # version reported by `annotate_variation.pl -h`
-versionsuffix = '-Perl-%(perlver)s'
+version = '20250302'  # version reported by `annotate_variation.pl -h`
 
 homepage = 'http://annovar.openbioinformatics.org/en/latest/'
 description = """ANNOVAR is an efficient software tool to utilize update-to-date information
 to functionally annotate genetic variants detected from diverse genomes (including human
 genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others)."""
 
-toolchain = {'name': 'GCCcore', 'version': '11.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
+download_instructions = """
+Registration required for download
+via http://www.openbioinformatics.org/annovar/annovar_download_form.php
+rename after download to %(namelower)s-%(version)s.tar.gz
+"""
 sources = ['%(namelower)s-%(version)s.tar.gz']
-checksums = ['4061af3f2cc8f3d4d8187986c3d468a4b6ae145eec1858e85c7cd1059debb8ed']
-download_instructions = f"""Registration is required to download {name}.
-1. Download from http://www.openbioinformatics.org/annovar/annovar_download_form.php
-2. Rename downloaded file to {sources[0]}"""
+checksums = ['d32e18747eb3eafdc4889397483fbd9d15ac8aeefda14ef17442ae54dd192f57']
 
-dependencies = [('Perl', '5.34.0')]
+dependencies = [('Perl', '5.38.0')]
 
-modextrapaths = {
-    'PATH': '',
-}
+modextrapaths = {'PATH': ''}
 
 sanity_check_paths = {
     'files': ["annotate_variation.pl", "coding_change.pl", "convert2annovar.pl", "retrieve_seq_from_fasta.pl",

[PhoenixEmik]

Test report by @PhoenixEmik
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
rocky-8-build - Linux Rocky Linux 8.10 (Green Obsidian), x86_64, AMD Ryzen 7 7840HS w/ Radeon 780M Graphics, Python 3.9.20
See https://gist.github.com/PhoenixEmik/87d0b5a8d07c14cb3859b81b6997f259 for a full test report.