{vis}[GCCcore/12.3.0,GCCcore/13.3.0] GraphicsMagick v1.3.45 for GCCcore-12.3.0 + use patch to fix pkgconfig file for GraphicsMagick 1.3.45 #22930

Crivella · 2025-05-22T09:37:28Z

New EC files for GraphicsMagick and foss/2023a with potential fix for

GraphicsMagick pkg-config fails due to misnamed libtiff-4.pc file #22927
Octave configure script fails to pick up statically compiled GraphicsMagick library #22929

If from the discussion on the PR/Issue it is decided this is the proper way to go we should apply the change to enable both static and shared builds (+ sanity checks)

# When building Octave, mixing rpathed shared libraries with libGraphicsMagick++.a will cause the check on the library
# to fail due to missing symbols. The default previously was to build the static library only.
configure_opts = '--enable-shared --enable-static'

also to

GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

github-actions · 2025-05-22T09:37:55Z

Updated software `GraphicsMagick-1.3.45-GCCcore-12.3.0.eb`

Diff against GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-12.3.0.eb
index e87e666c36..19209004f4 100644
--- a/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-12.3.0.eb
@@ -6,7 +6,7 @@ version = '1.3.45'
 homepage = 'http://www.graphicsmagick.org/'
 description = """GraphicsMagick is the swiss army knife of image processing."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 toolchainopts = {'pic': True}
 
 source_urls = [
@@ -24,21 +24,21 @@ checksums = [
 ]
 
 builddependencies = [
-    ('binutils', '2.42'),
-    ('Autotools', '20231222'),
+    ('binutils', '2.40'),
+    ('Autotools', '20220317'),
 ]
 
 dependencies = [
-    ('X11', '20240607'),
+    ('X11', '20230603'),
     ('bzip2', '1.0.8'),
-    ('freetype', '2.13.2'),
-    ('libpng', '1.6.43'),
-    ('libjpeg-turbo', '3.0.1'),
-    ('LibTIFF', '4.6.0'),
-    ('libxml2', '2.12.7'),
-    ('XZ', '5.4.5'),
-    ('zlib', '1.3.1'),
-    ('Ghostscript', '10.03.1'),
+    ('freetype', '2.13.0'),
+    ('libpng', '1.6.39'),
+    ('libjpeg-turbo', '2.1.5.1'),
+    ('LibTIFF', '4.5.0'),
+    ('libxml2', '2.11.4'),
+    ('XZ', '5.4.2'),
+    ('zlib', '1.2.13'),
+    ('Ghostscript', '10.01.2'),
 ]
 
 # When building Octave, mixing rpathed shared libraries with libGraphicsMagick++.a will cause the check on the library

Diff against GraphicsMagick-1.3.36-GCCcore-11.2.0.eb

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.36-GCCcore-11.2.0.eb

diff --git a/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.36-GCCcore-11.2.0.eb b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-12.3.0.eb
index 33c2b9373b..19209004f4 100644
--- a/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.36-GCCcore-11.2.0.eb
+++ b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-12.3.0.eb
@@ -1,51 +1,67 @@
 easyblock = 'ConfigureMake'
 
 name = 'GraphicsMagick'
-version = '1.3.36'
+version = '1.3.45'
 
 homepage = 'http://www.graphicsmagick.org/'
 description = """GraphicsMagick is the swiss army knife of image processing."""
 
-toolchain = {'name': 'GCCcore', 'version': '11.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 toolchainopts = {'pic': True}
 
 source_urls = [
     SOURCEFORGE_SOURCE,
     'ftp://ftp.graphicsmagick.org/pub/GraphicsMagick/%(version_major_minor)s/',
 ]
-sources = [SOURCE_TAR_GZ]
+sources = [SOURCE_TAR_XZ]
 patches = [
-    'GraphicsMagick_pkgconfig_libtiff.patch'
+    'GraphicsMagick-12.3.0_pkgconfig_libtiff-4.patch'
 ]
 checksums = [
-    '1e6723c48c4abbb31197fadf8396b2d579d97e197123edc70a4f057f0533d563',  # GraphicsMagick-1.3.36.tar.gz
-    '25b4c5361f30e23c809a078ac4b26e670d2b8341496323480037e2095d969294',  # GraphicsMagick_pkgconfig_libtiff.patch
+    {'GraphicsMagick-1.3.45.tar.xz': 'dcea5167414f7c805557de2d7a47a9b3147bcbf617b91f5f0f4afe5e6543026b'},
+    {'GraphicsMagick-12.3.0_pkgconfig_libtiff-4.patch':
+     'f3f900bcc4797f12ff3e2df0fc9eb67c0cc4e532531e200b8d283988f298fa48'},
 ]
 
 builddependencies = [
-    ('binutils', '2.37'),
-    ('Autotools', '20210726'),
+    ('binutils', '2.40'),
+    ('Autotools', '20220317'),
 ]
 
 dependencies = [
-    ('X11', '20210802'),
+    ('X11', '20230603'),
     ('bzip2', '1.0.8'),
-    ('freetype', '2.11.0'),
-    ('libpng', '1.6.37'),
-    ('libjpeg-turbo', '2.0.6'),
-    ('LibTIFF', '4.3.0'),
-    ('libxml2', '2.9.10'),
-    ('XZ', '5.2.5'),
-    ('zlib', '1.2.11'),
-    ('Ghostscript', '9.54.0'),
+    ('freetype', '2.13.0'),
+    ('libpng', '1.6.39'),
+    ('libjpeg-turbo', '2.1.5.1'),
+    ('LibTIFF', '4.5.0'),
+    ('libxml2', '2.11.4'),
+    ('XZ', '5.4.2'),
+    ('zlib', '1.2.13'),
+    ('Ghostscript', '10.01.2'),
 ]
 
+# When building Octave, mixing rpathed shared libraries with libGraphicsMagick++.a will cause the check on the library
+# to fail due to missing symbols. The default previously was to build the static library only.
+configure_opts = '--enable-shared --enable-static'
+
 modextrapaths = {MODULE_LOAD_ENV_HEADERS: ['include/GraphicsMagick']}
 
 sanity_check_paths = {
-    'files': ['bin/gm', 'lib/libGraphicsMagick.a', 'lib/libGraphicsMagick++.a',
-              'lib/libGraphicsMagickWand.a'],
+    'files': [
+        'bin/gm',
+        'lib/libGraphicsMagick.a',
+        'lib/libGraphicsMagick++.a',
+        'lib/libGraphicsMagickWand.a',
+        'lib/libGraphicsMagick.so',
+        'lib/libGraphicsMagick++.so',
+        'lib/libGraphicsMagickWand.so'
+    ],
     'dirs': ['include/GraphicsMagick', 'lib/pkgconfig'],
 }
 
+sanity_check_commands = [
+    "grep 'libtiff-4' %(installdir)s/lib/pkgconfig/GraphicsMagick.pc",
+]
+
 moduleclass = 'vis'

Crivella · 2025-05-22T09:43:27Z

Test report by @Crivella
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.12
See https://gist.github.com/Crivella/ca71c520dd38832bf5dcf77cdac44ca7 for a full test report.

Crivella · 2025-05-22T09:44:56Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--installpath /tmp/$USER/pr22930"

boegelbot · 2025-05-22T09:50:14Z

@Crivella: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22930 EB_ARGS="--installpath /tmp/$USER/pr22930" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22930 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
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Submitted batch job 6426

Test results coming soon (I hope)...

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boegelbot · 2025-05-22T09:55:25Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/0f21cff19f4c73ed932805e60eb06613 for a full test report.

Crivella · 2025-05-22T10:31:56Z

Test report by @Crivella
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.12
See https://gist.github.com/Crivella/d5a2d5960ede9e3aad60719578251cad for a full test report.

Notes

This can serve as an example of the pkg-config error that will happen if the libtiff is used in the .pc file instead of libtiff-4

Crivella · 2025-05-22T11:09:06Z

Test report by @Crivella
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.12
See https://gist.github.com/Crivella/cd44a60f42443408c269666439c4e8ff for a full test report.

Crivella · 2025-05-22T11:09:34Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--installpath /tmp/$USER/pr22930"

boegelbot · 2025-05-22T11:10:08Z

@Crivella: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22930 EB_ARGS="--installpath /tmp/$USER/pr22930" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22930 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

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boegelbot · 2025-05-22T11:19:32Z

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Crivella · 2025-05-22T13:34:23Z

Test report by @Crivella
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Build succeeded for 3 out of 3 (3 easyconfigs in total)
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See https://gist.github.com/Crivella/93a5479975d07ce02a42bb4806c94d36 for a full test report.

jfgrimm · 2025-05-22T14:21:33Z

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

+sanity_check_commands = [
+    "pkg-config --cflags GraphicsMagick",
+    "pkg-config --cflags GraphicsMagick++",
+    "pkg-config --cflags GraphicsMagickWand",
+]


you're relying on the OS having pkg-config installed here

For now I've added the pkgconf to the normal dependencies (70e1fd8), by looking at the code I do not see an easy way to have an equivalent of builddependencies for sanity checks.
As far as i understand, the dependencies for the sanity check are pulled in through the creation of a fake module, which filters out the deps marked as build_only

Yeah, build dependencies won't be loaded anymore during sanity check (and that's intentional).

I guess we could consider introducing a concept like sanity_check_deps, i.e. extra module that should be loaded only during the sanity check (not by the module that's generated).

You could look into easybuilders/easybuild-framework#4766 for inspiration for that

I think it would just suffice to check that the .pc files exist rather than complicating things.

The problem is that the patch file is adding a required dependency to LibTIFF which before was done by looking for libtiff.pc but as far back as i could check it should be libtiff-4.pc (not sure if the foss 2020b versiona ctually required libtiff.pc).
This was causing the pkgconfig command to fail eg during the installation of Octave.
I am not sure we should be checking the pkgconfig of a separate package than the installation manually?

maybe just do a grep on libtiff-4 in the pc file?

I guess i also wanted to future-proof this against changes in the LibTIFF dependency, but that could make sense since it would require also changing the patch files 🤔

boegelbot · 2025-05-22T14:43:49Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/f564b0954e97dba2f992dbc93c7b8042 for a full test report.

Crivella · 2025-05-22T15:42:27Z

Running another local test after 70e1fd8

This was also tested in

{math}[foss/2023a] Octave v10.1.0 #22932 (comment)

as a dependency for Octave

Crivella · 2025-05-22T15:44:24Z

Test report by @Crivella
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.12
See https://gist.github.com/Crivella/68e38d5e6df1cbe01d2020cc10af356b for a full test report.

…sybuilders#22929

Crivella · 2025-06-10T09:50:04Z

Switched to using grep as suggested by @smoors .
Atleast now we have a check to make sure the patch is implementing the proper dep in the pc files.

This package is only used in Octave and before the configuration check for it was failing and just ~silently disabling the related features in Octave without raising an error

Crivella · 2025-06-10T09:52:04Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--installpath /tmp/$USER/pr22930"

Crivella · 2025-06-10T09:56:55Z

Test report by @Crivella
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/ef6daefca18459ebcc1da1839d18047e for a full test report.

boegelbot · 2025-06-10T10:00:09Z

@Crivella: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22930 EB_ARGS="--installpath /tmp/$USER/pr22930" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22930 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

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boegelbot · 2025-06-10T10:11:27Z

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jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
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easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick_pkgconfig_libtiff-4.patch

Crivella · 2025-06-11T08:16:54Z

Test report by @Crivella
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/479aea62290c9f5dc9644b2685e709f8 for a full test report.

ocaisa

LGTM

ocaisa · 2025-07-10T12:57:35Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--installpath /tmp/$USER/pr22930"

boegelbot · 2025-07-10T13:00:11Z

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22930 EB_ARGS="--installpath /tmp/$USER/pr22930" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22930 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

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Submitted batch job 7208

Test results coming soon (I hope)...

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ocaisa · 2025-07-10T13:04:29Z

Test report by @ocaisa
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
LAPTOP-O6HF2IKC - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 11th Gen Intel(R) Core(TM) i7-1185G7 @ 3.00GHz, Python 3.11.4
See https://gist.github.com/ocaisa/5fe35830af1b1ab70d14a2d5a54f9385 for a full test report.

boegelbot · 2025-07-10T13:09:39Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/d643f7b554e8057f2294f1469a2e2c27 for a full test report.

ocaisa · 2025-07-10T13:12:35Z

I can only test a single version locally as I miss the rest of the stack, but in general things look good, thanks @Crivella

Crivella added bug fix update labels May 22, 2025

Crivella added this to the release after 5.1.0 milestone May 22, 2025

github-actions bot added the change label May 22, 2025

Crivella changed the title ~~{vis}[GCCcore/12.3.0] Added GraphicMagick-1.3.45 EC for GCCcore-12.3.0 with potential fix for Octave~~ {vis}[GCCcore/12.3.0,GCCcore/13.3.0] Added GraphicMagick-1.3.45 EC for GCCcore-12.3.0 + fix for #22927 May 22, 2025

Crivella mentioned this pull request May 22, 2025

Add a symlink libtiff-4.pc -> libtiff.pc #22928

Closed

This was referenced May 22, 2025

GraphicsMagick pkg-config fails due to misnamed libtiff-4.pc file #22927

Closed

{math}[foss/2023a] Octave v10.1.0 #22932

Merged

Crivella changed the title ~~{vis}[GCCcore/12.3.0,GCCcore/13.3.0] Added GraphicMagick-1.3.45 EC for GCCcore-12.3.0 + fix for #22927~~ {vis}[GCCcore/12.3.0,GCCcore/13.3.0] Added GraphicsMagick-1.3.45 EC for GCCcore-12.3.0 + fix for #22927 May 22, 2025

Crivella added 2023a 2024a issues & PRs related to 2024a common toolchains labels May 22, 2025

jfgrimm reviewed May 22, 2025

View reviewed changes

Crivella added 4 commits June 10, 2025 11:39

Added GraphicMagick EC for GCCcore-12.3.0 with potential fix for ea…

9d325fb

…sybuilders#22929

Modified patch file to use proper name of libtiff for pkg-config

e8903df

Added sanity check commands for pkg-config

076f7cd

Fix checksums

87b7a28

Crivella added 3 commits June 10, 2025 11:39

Added pkgconfigs to the deps to ensure the sanity check can be ran

6cbc5de

Added comments to the pkgconf dependency

9509af9

Switched pkgconf as a sanitycheck_dep

f9f9039

Crivella force-pushed the feature-GraphicMagick branch from b6bb277 to f9f9039 Compare June 10, 2025 09:40

Just switch to grep

3d7389c

smoors reviewed Jun 10, 2025

View reviewed changes

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb Outdated Show resolved Hide resolved

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick_pkgconfig_libtiff-4.patch Show resolved Hide resolved

Crivella added 2 commits June 11, 2025 10:05

Versioned and author info

5786a5d

Adjusted patch name and checksums in ECs

77cff7b

Crivella mentioned this pull request Jun 18, 2025

add sanitycheck_dependencies easyconfig parameter easybuilders/easybuild-framework#4916

Draft

Crivella mentioned this pull request Jul 1, 2025

{math}[intel/2023b] Octave v9.2.0, SUNDIALS v7.0.0, GraphicsMagick v1.3.43 #23229

Open

1 task

boegel modified the milestones: 5.1.1, release after 5.1.1 Jul 5, 2025

This was linked to issues Jul 7, 2025

GraphicsMagick pkg-config fails due to misnamed libtiff-4.pc file #22927

Closed

Octave configure script fails to pick up statically compiled GraphicsMagick library #22929

Closed

ocaisa approved these changes Jul 10, 2025

View reviewed changes

ocaisa merged commit ca5dddb into easybuilders:develop Jul 10, 2025
8 checks passed

Crivella deleted the feature-GraphicMagick branch July 10, 2025 13:29

boegel changed the title ~~{vis}[GCCcore/12.3.0,GCCcore/13.3.0] Added GraphicsMagick-1.3.45 EC for GCCcore-12.3.0 + fix for #22927~~ {vis}[GCCcore/12.3.0,GCCcore/13.3.0] Added GraphicsMagick-1.3.45 EC for GCCcore-12.3.0 + fix pkgconfig file for GraphicsMagick 1.3.45 Jul 31, 2025

{vis}[GCCcore/12.3.0,GCCcore/13.3.0] GraphicsMagick v1.3.45 for GCCcore-12.3.0 + use patch to fix pkgconfig file for GraphicsMagick 1.3.45 #22930

{vis}[GCCcore/12.3.0,GCCcore/13.3.0] GraphicsMagick v1.3.45 for GCCcore-12.3.0 + use patch to fix pkgconfig file for GraphicsMagick 1.3.45 #22930

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