Basix/0.9.0-gfbf-2024a, nanobind/2.6.1-GCCcore-13.3.0.eb, robin-map/1.4.0-GCCcore-13.3.0, scikit-build-core/0.11.0-GCCcore-13.3.0 #22697

moravveji · 2025-04-03T08:52:09Z

This PR adds Basix which is one of the dependencies of DOLFINx.

requires:

New easyblock for Basix easybuild-easyblocks#3684 easybuild-easyblocks#3684

Furthermore, these new easyconfigs are either created or a newer version is proposed:

scikit-build-core/0.11.0-GCCcore-13.3.0
robin-map/1.4.0-GCCcore-13.3.0
nanobind/2.6.1-GCCcore-13.3.0

I also have to admit that this PR is inspired by PR #22422.

github-actions · 2025-04-03T08:52:37Z

Updated software `scikit-build-core-0.11.0-GCCcore-13.3.0.eb`

Diff against scikit-build-core-0.11.1-GCCcore-14.2.0.eb

easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.1-GCCcore-14.2.0.eb

diff --git a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.1-GCCcore-14.2.0.eb b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
index 3357b19e19..135b7b0f8c 100644
--- a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.1-GCCcore-14.2.0.eb
+++ b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
@@ -1,23 +1,24 @@
 easyblock = 'PythonBundle'
 
 name = 'scikit-build-core'
-version = '0.11.1'
+version = '0.11.0'
 
 homepage = 'https://scikit-build.readthedocs.io/en/latest/'
 description = """Scikit-build-core is a complete ground-up rewrite of scikit-build on top of
 modern packaging APIs. It provides a bridge between CMake and the Python build
 system, allowing you to make Python modules with CMake."""
 
-toolchain = {'name': 'GCCcore', 'version': '14.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 builddependencies = [
     ('binutils', '2.42'),
-    ('hatchling', '1.27.0'),
+    ('hatchling', '1.24.2'),
 ]
 
 dependencies = [
-    ('Python', '3.13.1'),
-    ('CMake', '3.31.3'),
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('CMake', '3.29.3'),
 ]
 
 exts_list = [
@@ -25,11 +26,8 @@ exts_list = [
         'sources': ['pyproject_metadata-%(version)s.tar.gz'],
         'checksums': ['b8b2253dd1b7062b78cf949a115f02ba7fa4114aabe63fa10528e9e1a954a816'],
     }),
-    ('pathspec', '0.12.1', {
-        'checksums': ['a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712'],
-    }),
     ('scikit_build_core', version, {
-        'checksums': ['4e5988df5cd33f0bdb9967b72663ca99f50383c9bc21d8b24fa40c0661ae72b7'],
+        'checksums': ['423d8b0885bf1942816c851f8ec7c1efc0a7ecad4f38ff43d5ba869a894b107b'],
     }),
 ]

Diff against scikit-build-core-0.9.3-GCCcore-12.3.0.eb

easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.9.3-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.9.3-GCCcore-12.3.0.eb b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
index c975eed4e9..135b7b0f8c 100644
--- a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.9.3-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
@@ -1,33 +1,33 @@
 easyblock = 'PythonBundle'
 
 name = 'scikit-build-core'
-version = '0.9.3'
+version = '0.11.0'
 
 homepage = 'https://scikit-build.readthedocs.io/en/latest/'
 description = """Scikit-build-core is a complete ground-up rewrite of scikit-build on top of
 modern packaging APIs. It provides a bridge between CMake and the Python build
 system, allowing you to make Python modules with CMake."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 builddependencies = [
-    ('binutils', '2.40'),
-    ('hatchling', '1.18.0'),
+    ('binutils', '2.42'),
+    ('hatchling', '1.24.2'),
 ]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Python-bundle-PyPI', '2023.06'),
-    ('CMake', '3.26.3'),
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('CMake', '3.29.3'),
 ]
 
 exts_list = [
-    ('pyproject-metadata', '0.8.0', {
+    ('pyproject-metadata', '0.9.1', {
         'sources': ['pyproject_metadata-%(version)s.tar.gz'],
-        'checksums': ['376d5a00764ac29440a54579f88e66b7d9cb7e629d35c35a1c7248bfebc9b455'],
+        'checksums': ['b8b2253dd1b7062b78cf949a115f02ba7fa4114aabe63fa10528e9e1a954a816'],
     }),
     ('scikit_build_core', version, {
-        'checksums': ['341d113e473a5409dc62522e8b1b1b8b1647a0b95557ad15f6be2a36071fd390'],
+        'checksums': ['423d8b0885bf1942816c851f8ec7c1efc0a7ecad4f38ff43d5ba869a894b107b'],
     }),
 ]

Diff against scikit-build-core-0.10.6-GCCcore-13.3.0.eb

easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.10.6-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.10.6-GCCcore-13.3.0.eb b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
index ea8185a839..135b7b0f8c 100644
--- a/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.10.6-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/s/scikit-build-core/scikit-build-core-0.11.0-GCCcore-13.3.0.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'scikit-build-core'
-version = '0.10.6'
+version = '0.11.0'
 
 homepage = 'https://scikit-build.readthedocs.io/en/latest/'
 description = """Scikit-build-core is a complete ground-up rewrite of scikit-build on top of
@@ -22,8 +22,12 @@ dependencies = [
 ]
 
 exts_list = [
+    ('pyproject-metadata', '0.9.1', {
+        'sources': ['pyproject_metadata-%(version)s.tar.gz'],
+        'checksums': ['b8b2253dd1b7062b78cf949a115f02ba7fa4114aabe63fa10528e9e1a954a816'],
+    }),
     ('scikit_build_core', version, {
-        'checksums': ['5397db8f09ee050d145406c11deed06538bb0b261df95f8d2d6aaf8699f0126d'],
+        'checksums': ['423d8b0885bf1942816c851f8ec7c1efc0a7ecad4f38ff43d5ba869a894b107b'],
     }),
 ]

sassy-crick · 2025-05-13T08:13:37Z

It appears theBasix-0.9.0-enable-distribution.patch is missing?

moravveji · 2025-08-25T19:49:21Z

@sassy-crick : I would like to revive this PR and bring it back to life. Are there still any steps I shall take to have it tested? Unfortunately, the easyblock cannot be automatically found, and few tests fail. How can I resolve this issue?

Thyre · 2025-10-13T13:16:22Z

Are there any particular reasons why we include the newer versions of nanobind, scikit-build-core and robin-map?
We typically try to avoid having multiple versions for dependencies in a single toolchain. This would affect nanobind and robin-map.

Thyre · 2025-10-13T13:17:30Z

easybuild/easyconfigs/b/Basix/Basix-0.9.0-gfbf-2024a.eb

+parallel = 8
+


Is there a reason why we set this to 8?
Typically, this would be handled by users by their parallel and max-parallel config options.

There might be a reason to set it to 1, e.g. when a parallel build causes build failures. But I don't think this is the case here.

Sure. I removed it in 72d63e5.

Thyre · 2025-10-13T13:17:55Z

easybuild/easyconfigs/b/Basix/Basix-0.9.0-gfbf-2024a.eb

+    'download_dep_fail': True,
+    'use_pip': True,
+    'sanity_pip_check': True,


I think those should be set by EB 5.x by default, so we don't need to specify them here anymore.

Cleaned up in 72d63e5.

Thyre · 2025-10-13T13:19:14Z

Based on the discussion in easybuilders/easybuild-easyblocks#3684, trying PythonPackage or PythonBundle would be great.
We could then avoid having the separate EasyBlock. Then, the CI would also "work", since it knows all the EasyBlocks.

moravveji · 2025-10-23T19:20:06Z

Are there any particular reasons why we include the newer versions of nanobind, scikit-build-core and robin-map? We typically try to avoid having multiple versions for dependencies in a single toolchain. This would affect nanobind and robin-map.

This PR was pushed on 3 April whereas the older versions of nanobind, scikit-build-core and robin-map are merged to develop/master branches few months after that. At the time this PR was pushed and was waiting for a review, the proposed versions of these packages were the latest versions, and they could perfectly fit in, and fill up missing easyconfigs for 2024a toolchain. However, this PR has now collected a lot of "dust" and needs adjustment. Although that is gonna take me some more time, but I will try to accommodate it.

moravveji · 2025-10-23T19:38:29Z

We typically try to avoid having multiple versions for dependencies in a single toolchain. This would affect nanobind and robin-map.

The commit 6befba9 retracts the proposed easyconfigs for those conflicting modules to adopt the existing versions from the 2024a toolchain.

adding Basix and few dependencies for 2024a

a22168a

github-actions bot added new update labels Apr 3, 2025

moravveji added 3 commits April 3, 2025 11:13

rebuild

94f9218

fixing indentations

db88147

trailing whitespace

b34dc1a

moravveji mentioned this pull request Apr 3, 2025

{numlib}[foss/2024a] DOLFINx-0.9.0, FFCx-0.9.0, KaHIP-3.18, spdlog-1.12.0, UFL-2024.2.0, scikit-build-core-0.11.0 #22700

Open

1 task

moravveji added 2 commits April 3, 2025 13:38

fixing indentation

1046e5e

removing pip options

224880d

adding the missing patch

dbe8365

moravveji changed the title ~~adding Basix and few dependencies for 2024a~~ Basix/0.9.0-gfbf-2024a, nanobind/2.6.1-GCCcore-13.3.0.eb, robin-map/1.4.0-GCCcore-13.3.0, scikit-build-core/0.11.0-GCCcore-13.3.0 Jun 5, 2025

Thyre added the 2024a issues & PRs related to 2024a common toolchains label Aug 18, 2025

Thyre reviewed Oct 13, 2025

View reviewed changes

moravveji added 2 commits October 23, 2025 21:31

merge develop into basix-2024a

eb99cb6

adopting existing easyconfigs from 2024a

6befba9

github-actions bot removed the update label Oct 23, 2025

cleanup and use default values

72d63e5

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Updated software `scikit-build-core-0.11.0-GCCcore-13.3.0.eb`