{math}[GCCcore/10.3.0] jupyter-matlab-proxy v0.3.4 w/ Python 3.9.5

[Micket]

(created using eb --new-pr)
Big problem remains: We had MATLAB's runtime libs conflict with our stuff, in particular, npm is broken here.

We should look into whether or not we need to add all those paths to LD_LIBRARY_PATH in MATLAB, I don't think they are actually necessary in most usecases.

[boegelbot]

@Micket: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/1416302957
Output from first failing test suite run:

(skipped conflicts test)
(skipped dep graph test)
Merge base for develop and HEAD: 17f3613c12e7b4d39fb8c44abeeb1dcff24362e2
Merge base for develop and HEAD: 17f3613c12e7b4d39fb8c44abeeb1dcff24362e2

List of added easyconfig files in this PR:
	jupyter-matlab-proxy-0.3.4-GCCcore-10.3.0-MATLAB-2021a.eb
======================================================================
FAIL: test__parse_easyconfig_jupyter-matlab-proxy-0.3.4-GCCcore-10.3.0-MATLAB-2021a.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig jupyter-matlab-proxy-0.3.4-GCCcore-10.3.0-MATLAB-2021a.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1368, in innertest
    template_easyconfig_test(self, spec_path)
  File "test/easyconfigs/easyconfigs.py", line 1206, in template_easyconfig_test
    "binutils or GCC is a build dep in %s: %s" % (spec, dep_names))
AssertionError: binutils or GCC is a build dep in /home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/j/jupyter-matlab-proxy/jupyter-matlab-proxy-0.3.4-GCCcore-10.3.0-MATLAB-2021a.eb: ['Python', 'JupyterLab', 'nodejs', 'Xvfb', 'MATLAB']

======================================================================
FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 783, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>20(1[89]|[2-9][0-9])[ab]).*\.eb$' easyconfigs:

found 2 variants of 'nodejs' dependency in easyconfigs using '2021a' toolchain generation
* version: 14.17.0; versionsuffix:  as dep for set(['IRkernel-1.2-foss-2021a-R-4.1.0.eb', 'lavaan-0.6-9-foss-2021a-R-4.1.0.eb', 'rgeos-0.5-5-foss-2021a-R-4.1.0.eb', 'rjags-4-10-foss-2021a-R-4.1.0.eb', 'R-4.1.0-foss-2021a.eb', 'RStudio-Server-1.4.1717-foss-2021a-Java-11-R-4.1.0.eb', 'arrow-R-6.0.0.2-foss-2021a-R-4.1.0.eb', 'inferCNV-1.3.3-foss-2021a.eb', 'spatialreg-1.1-8-foss-2021a-R-4.1.0.eb', 'rgdal-1.5-23-foss-2021a-R-4.1.0.eb', 'ncdf4-1.17-foss-2021a-R-4.1.0.eb', 'Rgurobi-9.1.2-foss-2021a-R-4.1.0.eb', 'R-bundle-Bioconductor-3.13-foss-2021a-R-4.1.0.eb'])
* version: 14.17.2; versionsuffix:  as dep for set(['jupyter-matlab-proxy-0.3.4-GCCcore-10.3.0-MATLAB-2021a.eb'])


----------------------------------------------------------------------
Ran 13560 tests in 632.598s

FAILED (failures=2)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[Micket]

Updated based on zoom disucssion. Dropped matlab, replaced with a message. Also add patch for using EB installed matlab license by default.

[Micket]

@boegelbot please test @ generoso

[boegelbot]

@Micket: Request for testing this PR well received on login1

PR test command 'EB_PR=14270 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14270 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7366

Test results coming soon (I hope)...

- notification for comment with ID 980087222 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[Micket]

Test report by @Micket
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
alvis-c1 - Linux centos linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/dbbc9215c933beb3ab0fd712785628b3 for a full test report.

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/c1303e8ff93870e063116d5fe43f07f3 for a full test report.

[SebastianAchilles]

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsfc01.int.jusuf.sebastian.cluster - Linux rocky linux 8.4, x86_64, AMD EPYC 7742 64-Core Processor (zen2), 1 x NVIDIA GRID V100-4C, 460.73.01, Python 3.6.8
See https://gist.github.com/37b1a891e042e88791f94691dd4eff6f for a full test report.

[SebastianAchilles]

lgtm

[akesandgren]

LGTM

[akesandgren]

Going in, thanks @Micket!