{lang}[foss/2021b] R v4.1.2

[branfosj]

(created using eb --new-pr)

replaces #14054, as R 4.1.2 is out.

• I've added in ncdf4, rather than having it as a separate ec - all the dependencies are already here so I see no reason for it to be a separate ec

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bb-pg-login02.bear.cluster - Linux RHEL 8.3, x86_64, Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz (broadwell), Python 3.6.8
See https://gist.github.com/9049d4e106a7d225e80782471cd54b22 for a full test report.

edit: eb --fetch --force-download check

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.3, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/cc9b92c8c9f3ccaf07a25cf0cdfb59d7 for a full test report.

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 3 out of 3 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux centos linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/b6fd41a273aa43f8fefcac9ee7ed5769 for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0104u09b.bear.cluster - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/834cef2cebe75981fd09b2f0c3d40bb5 for a full test report.

[verdurin]

Inevitable checksum fun:

== 2021-11-02 07:10:49,382 filetools.py:1301 DEBUG Computed sha256 checksum for /mnt/ds918plus/eb/common/sources/r/R/R-4.1.2.tar.gz: e62643d2f66588e2c745c9f6c0b5559c60db5a71b0584b1ece31dd2a8179eb21 (correct checksum: 2036225e9f7207d4ce097e54972aecdaa8b40d7d9911cd26491fac5a0fab38af)
== 2021-11-02 07:10:49,388 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Checksum verification for /mnt/ds918plus/eb/common/sources/r/R/R-4.1.2.tar.gz using 2036225e9f7207d4ce097e54972aecdaa8b40d7d9911cd26491fac5a0fab38af failed. (at easybuild/framework/easyblock.py:2211 in checksum_step)

[branfosj]

$ wget https://cran.r-project.org/src/base/R-4/R-4.1.2.tar.gz
$ sha256sum R-4.1.2.tar.gz
2036225e9f7207d4ce097e54972aecdaa8b40d7d9911cd26491fac5a0fab38af  R-4.1.2.tar.gz
$ rm R-4.1.2.tar.gz
$ wget https://cloud.r-project.org/src/base/R-4/R-4.1.2.tar.gz
$ sha256sum R-4.1.2.tar.gz
2036225e9f7207d4ce097e54972aecdaa8b40d7d9911cd26491fac5a0fab38af  R-4.1.2.tar.gz

I'm consistently getting the 203... cehcksums that is in the easyconfig. @verdurin can you check whether there is an issue with your download?

[verdurin]

@branfosj yes, I think that's a false alarm. Running a second build now.

[branfosj]

@boegelbot please test @ generoso
EB_ARGS="--parallel-extensions-install --experimental"
CORE_CNT=16

[boegelbot]

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=14264 EB_ARGS="--parallel-extensions-install --experimental" /opt/software/slurm/bin/sbatch --job-name test_PR_14264 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7200

Test results coming soon (I hope)...

- notification for comment with ID 957326205 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
cnx1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/655dd5eac865d6c306ea2d308a6e5d31 for a full test report.

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
centos7.lan - Linux centos linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/ad3488172f6b4cb5eb9f832ffca83714 for a full test report.

[verdurin]

Looks fine.

[verdurin]

Going in, thanks @branfosj!