Description (keep this list alphabetical please)
High priority
{chem}[system/system] ADF v2019.303 #10190 {tools}[system] binutils v2.34 #9998 binutils 2.34 to use Bison 3.5.3 as build dep #10061 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 binutils 2.34 to use Bison 3.5.3 as build dep #10061 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 {devel}[gompi/2020a-rc3] Boost v1.72.0 #9981 {devel}[iimpi/2020a] Boost v1.72.0 #10099 {lib}[gompi/2020a,iimpi/2020a] Boost.Python v1.72.0 w/ Python 2.7.17 + 3.8.2 #10172 {devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143 {devel,tools}[GCCcore/9.2.0] CMake v3.16.4, cURL v7.69.0 #9979 {lib}[GCCcore/9.3.0] CLISP v2.49, DB v18.1.32, libffcall v2.2, ... #10088 {math}[foss/2020a,intel/2020a] ELPA v2019.11.001 #10142 {lang,tools}[GCCcore/9.3.0] Perl v5.30.2, expat v2.2.9 #10097 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 {vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101 {vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101 {compiler}[system/system] GCCcore v9.3.0 #10050 {data}[foss/2020a,intel/2020a] GDAL v3.0.4 w/ Python 3.8.2 #10162 {toolchain}[system/system] gimkl v2020a #10100 {devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143 {vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101 {bio}[foss/2020a] GROMACS v2020.1 w/ Python 3.8.2 #10026 {devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 {data}[gompi/2020a,iimpi/2020a] HDF5 v1.12.0 #10131 Revert to HDF5 1.10.6 due to API compatibility issues #10173 {devel,tools}[GCCcore/9.3.0] intltool v0.51.0 #10106 {chem}[intel/2020a] LAMMPS v3Mar2020 w/ Python 3.8.2 #10191 {chem}[foss/2020a] LAMMPS v3Mar2020 w/ Python 3.8.2 #10406 {compiler,tools}[GCCCore/9.3.0] LLVM v9.0.1, re2c v1.3 #10133 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 {lib}[GCCcore/9.3.0] Mesa v20.0.2, zstd v1.4.4, lz4 v1.9.2 #10175 {tools}[GCCcore/9.3.0] Meson v0.53.2 w/ Python 3.8.2 #10114 {math}[foss/2020a,intel/2020a] MUMPS v5.2.1 #10139 {tools}[GCCcore/9.3.0] gettext v0.20.1 #10074 {data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135 {data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135 {data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135 networkx: Update SciPy version to 2020.03. #10119 {tools}[GCCcore/9.3.0] Meson v0.53.2 w/ Python 3.8.2 #10114 {math}[gompi/2020a,iimpi/2020a] ParMETIS v4.0.3 #10103 {devel}[GCCcore/9.3.0] PCRE v8.44 #10124 {lang,tools}[GCCcore/9.3.0] Perl v5.30.2, expat v2.2.9 #10097 {numlib}[foss/2020a] PETSc v3.12.4 #10178 {numlib}[intel/2020a] PETSc v3.12.4 #10156 {devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143 ÅS ) ({chem}[foss/2020a,intel/2020a] PLUMED v2.6.0 w/ Python 3.8.2 #10187 {lang}[GCCcore/9.3.0] Python v2.7.17 #10145 * or wait for final 2.7.18 release in April 2020? see https://www.python.org/doc/sunset-python-2/ {lang}[GCCcore/9.2.0] Python v3.8.2 (+ deps) #9949 WIP: {devel}[foss/2020a] PyTorch v1.4.0 w/ Python 3.8.2 #10141 {devel}[GCCcore/9.3.0] Qt5 v5.14.1 #10223 {lang}[foss/2020a] R v3.6.3 #10200 {lib}[foss/2020a-rc3] SciPy-bundle v2020.02, pybind11 v2.4.3 w/ Python 3.8.2 #9999 add pthread patch for scipy 1.4.1 in SciPy-bundle to fix issue on ppc64le #10010 Update SciPy-bundle-2020.02 with numpy-1.18.2 #10111 Update version number for SciPy-bundle to 2020.03 due to updated numpy. #10118 {lang}[intel/2020a] SciPy-bundle v2020.02 w/ Python 3.8.2 #10112 Update version number for SciPy-bundle to 2020.03 due to updated numpy. #10118 {vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101 {vis}[GCCcore/9.3.0] X11 v20200222 #10113 {tools}[GCCcore/9.3.0] binutils v2.34 #10062 {math}[GCC/9.3.0,iccifort/2020.0.166] GEOS v3.8.1 w/ Python 3.8.2 #10150 {devel}[GCCcore/9.3.0] SWIG v4.0.1 #10147 {vis}[GCCcore/9.3.0] JasPer v2.0.14 #10152 {lib}[GCCcore/9.3.0] PROJ v7.0.0 #10154 {lib}[GCCcore/9.3.0] libgeotiff v1.5.1 #10155
Lower priority
avoid relying on system toolchain for Eigen build dep required by pybind11 #10098 {vis}[GCCcore/9.3.0] FFmpeg v4.2.2, FriBidi v1.0.9, LAME v3.100, ... #10129 {vis}[GCCcore/9.3.0] Gdk-Pixbuf v2.40.0 #10148 {bio}[GCC/9.3.0] HTSlib v1.10.2 #10206 {numlib}[intel/2020a] Hypre v2.18.2 #10130 {tools}[GCCcore/9.3.0] IPython v7.13.0, libsodium v1.0.18, OpenPGM v5.2.122, ... w/ Python 3.8.2 #10208 {vis}[GCCcore/9.3.0] Ghostscript v9.52, ImageMagick v7.0.10-1, LittleCMS v2.9 #10171 {chem}[GCC/9.3.0,iccifort/2020.0.166] libxc v4.3.4 #10149 {lib}[GCCcore/9.3.0] LibTIFF v4.1.0 #10096 {devel}[GCCcore/9.3.0] Mako v1.1.2 w/ Python 2.7.17 + 3.8.2 #10164 {lib}[GCCcore/9.3.0] PyYAML v5.3, libyaml v0.2.2 w/ Python 2.7.17 + 3.8.2 #10138 {numlib}[foss/2020a,intel/2020a] SuiteSparse v5.7.1 #10140 {tools}[GCCcore/9.3.0] libffi v3.3, bzip2 v1.0.8, Tcl v8.6.10, ... #10075 {vis}[GCCcore/9.3.0] Tk v8.6.10 #10127 {lang}[GCCcore/9.3.0] Tkinter v3.8.2 w/ Python 3.8.2 #10146 {vis}[foss/2020a,intel/2020a] VTK v8.2.0 w/ Python 3.8.2 #10253 {debugger}[gompi/2020a,iimpi/2020a] Valgrind v3.15 #10188 Reactions are currently unavailable
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(keep this list alphabetical please)
High priority
{tools}[system] binutils v2.34 #9998+binutils 2.34 to use Bison 3.5.3 as build dep #10061, GCCcore:{tools}[GCCcore/9.3.0] binutils v2.34 #10062)binutils 2.34 to use Bison 3.5.3 as build dep #10061, GCCcore:{tools}[GCCcore/9.3.0] binutils v2.34 #10062) (dep for binutils-GCCcore){devel}[gompi/2020a-rc3] Boost v1.72.0 #9981, iimpi:{devel}[iimpi/2020a] Boost v1.72.0 #10099){lib}[gompi/2020a,iimpi/2020a] Boost.Python v1.72.0 w/ Python 2.7.17 + 3.8.2 #10172(we do still seperate this from Boost, right?){devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143{devel,tools}[GCCcore/9.2.0] CMake v3.16.4, cURL v7.69.0 #9979){lib}[GCCcore/9.3.0] CLISP v2.49, DB v18.1.32, libffcall v2.2, ... #10088{math}[foss/2020a,intel/2020a] ELPA v2019.11.001 #10142{lang,tools}[GCCcore/9.3.0] Perl v5.30.2, expat v2.2.9 #10097dep for Perl){tools}[GCCcore/9.3.0] binutils v2.34 #10062(dep for binutils-GCCcore){vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101dep for X11){vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101dep for fontconfig){compiler}[system/system] GCCcore v9.3.0 #10050){data}[foss/2020a,intel/2020a] GDAL v3.0.4 w/ Python 3.8.2 #10162{devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143{vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101dep for fontconfig){devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143{tools}[GCCcore/9.3.0] binutils v2.34 #10062(dep for flex-GCCcore){data}[gompi/2020a,iimpi/2020a] HDF5 v1.12.0 #10131, revert to 1.10.6Revert to HDF5 1.10.6 due to API compatibility issues #10173{devel,tools}[GCCcore/9.3.0] intltool v0.51.0 #10106{tools}[GCCcore/9.3.0] binutils v2.34 #10062(dep for Bison-GCCcore){tools}[GCCcore/9.3.0] Meson v0.53.2 w/ Python 3.8.2 #10114{math}[foss/2020a,intel/2020a] MUMPS v5.2.1 #10139{tools}[GCCcore/9.3.0] gettext v0.20.1 #10074){data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135){data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135){data}[gompi/2020a,iimpi/2020a] netCDF v4.7.3, netCDF-C++4 v4.3.1, netCDF-Fortran v4.5.2 #10135)networkx: Update SciPy version to 2020.03. #10119{tools}[GCCcore/9.3.0] Meson v0.53.2 w/ Python 3.8.2 #10114{math}[gompi/2020a,iimpi/2020a] ParMETIS v4.0.3 #10103){devel}[GCCcore/9.3.0] PCRE v8.44 #10124{lang,tools}[GCCcore/9.3.0] Perl v5.30.2, expat v2.2.9 #10097){devel}[GCCcore/9.3.0] GObject-Introspection v1.64.0 w/ Python 3.8.2 #10143{chem}[foss/2020a,intel/2020a] PLUMED v2.6.0 w/ Python 3.8.2 #10187){lang}[GCCcore/9.3.0] Python v2.7.17 #10145)* or wait for final 2.7.18 release in April 2020? see https://www.python.org/doc/sunset-python-2/{lang}[GCCcore/9.2.0] Python v3.8.2 (+ deps) #9949){devel}[GCCcore/9.3.0] Qt5 v5.14.1 #10223){lang}[foss/2020a] R v3.6.3 #10200){lib}[foss/2020a-rc3] SciPy-bundle v2020.02, pybind11 v2.4.3 w/ Python 3.8.2 #9999+add pthread patch for scipy 1.4.1 in SciPy-bundle to fix issue on ppc64le #10010+Update SciPy-bundle-2020.02 with numpy-1.18.2 #10111+Update version number for SciPy-bundle to 2020.03 due to updated numpy. #10118, intel:{lang}[intel/2020a] SciPy-bundle v2020.02 w/ Python 3.8.2 #10112+Update version number for SciPy-bundle to 2020.03 due to updated numpy. #10118){vis}[GCCcore/9.3.0] freetype v2.10.1, fontconfig v2.13.1 #10101dep for fontconfig){vis}[GCCcore/9.3.0] X11 v20200222 #10113(depends on Meson+Ninja){tools}[GCCcore/9.3.0] binutils v2.34 #10062(dep for binutils-GCCcore){devel}[GCCcore/9.3.0] SWIG v4.0.1 #10147(dep for GEOS){vis}[GCCcore/9.3.0] JasPer v2.0.14 #10152(dep for GDAL){lib}[GCCcore/9.3.0] PROJ v7.0.0 #10154(dep for GDAL){lib}[GCCcore/9.3.0] libgeotiff v1.5.1 #10155(dep for GDAL)Lower priority
avoid relying on system toolchain for Eigen build dep required by pybind11 #100983.3.7 based on GCCcore-9.3.0-based builddeps){vis}[GCCcore/9.3.0] FFmpeg v4.2.2, FriBidi v1.0.9, LAME v3.100, ... #10129{vis}[GCCcore/9.3.0] Gdk-Pixbuf v2.40.0 #10148{vis}[GCCcore/9.3.0] Ghostscript v9.52, ImageMagick v7.0.10-1, LittleCMS v2.9 #10171{chem}[GCC/9.3.0,iccifort/2020.0.166] libxc v4.3.4 #10149{lib}[GCCcore/9.3.0] LibTIFF v4.1.0 #10096{devel}[GCCcore/9.3.0] Mako v1.1.2 w/ Python 2.7.17 + 3.8.2 #10164){lib}[GCCcore/9.3.0] PyYAML v5.3, libyaml v0.2.2 w/ Python 2.7.17 + 3.8.2 #10138{numlib}[foss/2020a,intel/2020a] SuiteSparse v5.7.1 #10140{tools}[GCCcore/9.3.0] libffi v3.3, bzip2 v1.0.8, Tcl v8.6.10, ... #10075){vis}[GCCcore/9.3.0] Tk v8.6.10 #10127{lang}[GCCcore/9.3.0] Tkinter v3.8.2 w/ Python 3.8.2 #10146)