use clean_dir instead of remove_dir on installation directory for Binary easyblock

[smoors]

(created using eb --new-pr)

[smoors]

Test report by @smoors

Overview of tested easyconfigs (in order)

• SUCCESS configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/705c8454d95d5f9a834b31964a387cda for a full test report.

[smoors]

Test report by @smoors

Overview of tested easyconfigs (in order)

• SUCCESS Kraken2-2.1.4-gompi-2024a.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/3e859c5b7a48c5b9fdcd76800e81a9db for a full test report.

[smoors]

Test report by @smoors

Overview of tested easyconfigs (in order)

• SUCCESS mgltools-1.5.7.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/a0ec4b4ab723ddf9800ee3cd80670a7a for a full test report.

[smoors]

@boegelbot please test @ jsc-zen3
EB_ARGS="QIIME2-2022.8.eb ant-1.10.15-Java-17.eb code-server-4.104.3.eb configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb Gradle-8.14.2-Java-17.eb --installpath=/tmp/$USER/ebpr-3927"

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3927 EB_ARGS="QIIME2-2022.8.eb ant-1.10.15-Java-17.eb code-server-4.104.3.eb configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb Gradle-8.14.2-Java-17.eb --installpath=/tmp/$USER/ebpr-3927" EB_CONTAINER= EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3927 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 8611

Test results coming soon (I hope)...

- notification for comment with ID 3473594997 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot

Overview of tested easyconfigs (in order)

• SUCCESS ant-1.10.15-Java-17.eb
• SUCCESS code-server-4.104.3.eb
• SUCCESS configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb
• SUCCESS Gradle-8.14.2-Java-17.eb
• FAIL (build issue) Miniconda3-4.12.0.eb (partial log available at https://gist.github.com/boegelbot/937aa9f70a238f43fb453268a8e04d11)
• FAIL (build issue) QIIME2-2022.8.eb (partial log available at https://gist.github.com/boegelbot/97b292ade9f1688d1bba7cf6e782b730)

Build succeeded for 4 out of 6 (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/b3c890aaf41147157a22430098efa710 for a full test report.

[smoors]

@boegelbot please test @ jsc-zen3
EB_ARGS="QIIME2-2022.8.eb --installpath=/tmp/$USER/ebpr-3927"

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3927 EB_ARGS="QIIME2-2022.8.eb --installpath=/tmp/$USER/ebpr-3927" EB_CONTAINER= EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3927 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 8621

Test results coming soon (I hope)...

- notification for comment with ID 3473691841 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot

Overview of tested easyconfigs (in order)

• FAIL (build issue) Miniconda3-4.12.0.eb (partial log available at https://gist.github.com/boegelbot/c826adad027f933528df3fe6d96e6c89)
• FAIL (build issue) QIIME2-2022.8.eb (partial log available at https://gist.github.com/boegelbot/e932ea4c76fce7f90fd01b5bf4648e33)

Build succeeded for 0 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/b32bfa286f223f726038df715ea91e3e for a full test report.

EDIT

download of https://repo.anaconda.com/miniconda/Miniconda3-py38_4.12.0-Linux-x86_64.sh failed, is this blocked on jsc-zen3?