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Fix pyarrow / cloudpickle failures in cluster testing #553

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Merged
charlesbluca merged 8 commits into from
May 24, 2022
Merged

Fix pyarrow / cloudpickle failures in cluster testing #553

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cf088f2
Explicitly install libstdcxx-ng in clusters
charlesbluca May 24, 2022
5bbae4c
Make pyarrow dependency consistent across testing
charlesbluca May 24, 2022
895dd9b
Make libstdcxx-ng dep a min version
charlesbluca May 24, 2022
e0d5979
Add cloudpickle to cluster dependencies
charlesbluca May 24, 2022
1fa2d8a
cloudpickle must be in the scheduler environment
charlesbluca May 24, 2022
cc3fbaf
Bump cloudpickle version
charlesbluca May 24, 2022
3245ecd
Move cloudpickle install to workers
charlesbluca May 24, 2022
0adc739
Fix pyarrow constraint in cluster spec
charlesbluca May 24, 2022
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2 changes: 1 addition & 1 deletion .github/cluster-upstream.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,6 @@ services:
command: dask-worker dask-scheduler:8786
environment:
USE_MAMBA: "true"
EXTRA_CONDA_PACKAGES: "dask/label/dev::dask pyarrow>1.0.0" # required for parquet IO
EXTRA_CONDA_PACKAGES: "dask/label/dev::dask pyarrow>=1.0.0 libstdcxx-ng>=12.1.0" # required for parquet IO
volumes:
- /tmp:/tmp
2 changes: 1 addition & 1 deletion .github/cluster.yml
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Expand Up @@ -13,6 +13,6 @@ services:
command: dask-worker dask-scheduler:8786
environment:
USE_MAMBA: "true"
EXTRA_CONDA_PACKAGES: "pyarrow>1.0.0" # required for parquet IO
EXTRA_CONDA_PACKAGES: "pyarrow>1.0.0 libstdcxx-ng>=12.1.0" # required for parquet IO
volumes:
- /tmp:/tmp
2 changes: 1 addition & 1 deletion continuous_integration/environment-3.10-jdk11-dev.yaml
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Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion continuous_integration/environment-3.10-jdk8-dev.yaml
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Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion continuous_integration/environment-3.8-jdk11-dev.yaml
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Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion continuous_integration/environment-3.8-jdk8-dev.yaml
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Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion continuous_integration/environment-3.9-jdk11-dev.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion continuous_integration/environment-3.9-jdk8-dev.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ dependencies:
- pre-commit>=2.11.1
- prompt_toolkit>=3.0.8
- psycopg2>=2.9.1
- pyarrow>=0.15.1
- pyarrow>=1.0.0
- pygments>=2.7.1
- pyhive>=0.6.4
- pytest-cov>=2.10.1
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2 changes: 1 addition & 1 deletion docker/conda.txt
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Expand Up @@ -13,7 +13,7 @@ tzlocal>=2.1
fastapi>=0.61.1
nest-asyncio>=1.4.3
uvicorn>=0.11.3
pyarrow>=0.15.1
pyarrow>=1.0.0
prompt_toolkit>=3.0.8
pygments>=2.7.1
dask-ml>=2022.1.22
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2 changes: 1 addition & 1 deletion docker/main.dockerfile
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Expand Up @@ -13,7 +13,7 @@ RUN conda config --add channels conda-forge \
"tzlocal>=2.1" \
"fastapi>=0.61.1" \
"uvicorn>=0.11.3" \
"pyarrow>=0.15.1" \
"pyarrow>=1.0.0" \
"prompt_toolkit>=3.0.8" \
"pygments>=2.7.1" \
"dask-ml>=2022.1.22" \
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -104,7 +104,7 @@ def build(self):
"pytest-cov>=2.10.1",
"mock>=4.0.3",
"sphinx>=3.2.1",
"pyarrow>=0.15.1",
"pyarrow>=1.0.0",
"dask-ml>=2022.1.22",
"scikit-learn>=0.24.2",
"intake>=0.6.0",
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