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adding json2csv to run-workflow #1658

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Merged
nfahlgren merged 2 commits into from
Jan 24, 2025
Merged

adding json2csv to run-workflow #1658

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a281939
adding json2csv to run-workflow
joshqsumner Jan 21, 2025
9c5b6a2
fixing time tracking
joshqsumner Jan 22, 2025
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10 changes: 10 additions & 0 deletions plantcv/parallel/cli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
import time
import datetime
import plantcv.parallel
import plantcv.utils
import tempfile
import shutil

Expand Down Expand Up @@ -119,6 +120,15 @@ def main():
print(f"Processing results took {process_results_clock_time} seconds.", file=sys.stderr)
###########################################

# Convert json results to csv files
###########################################
# Convert results start time
process_results_start_time = time.time()
print("Converting json to csv... ", file=sys.stderr)
plantcv.utils.json2csv(config.json, config.json)
print(f"Processing results took {process_results_clock_time} seconds.", file=sys.stderr)
###########################################

# Cleanup
if config.cleanup is True:
shutil.rmtree(config.tmp_dir)
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