Add LightningPoseDataInterface and LightningPoseConverter #633
Add LightningPoseDataInterface and LightningPoseConverter #633CodyCBakerPhD merged 33 commits intomainfrom
LightningPoseDataInterface and LightningPoseConverter #633Conversation
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LightningPoseDataInterfaceLightningPoseDataInterface and LightningPoseConverter
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@weiglszonja Do you happen to have an example file from a full conversion to examine alongside this PR? |
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Looks great to me, thanks a bunch @weiglszonja The only small detail that I'm OK with since this isn't required for a full publication ready conversion using |
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Retriggering CI docs... |
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## main #633 +/- ##
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+ Coverage 91.90% 92.00% +0.10%
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Files 113 115 +2
Lines 5792 5956 +164
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+ Hits 5323 5480 +157
- Misses 469 476 +7
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Add converter for LightningPose, uses
ndx-pose==0.1.0to addPoseEstimationwith thePoseEstimationSeriesfrom the predictions CSV file. The original video is added as ImageSeries tonwbfile.acquisition, while the optional labeled video is added tonwbfile.processing["behavior"]both inexternalmode.Resolve #628
https://github.com/danbider/lightning-pose/blob/main/docs/directory_structures.md#model-directory-structure
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