adding strelka paired mode #25
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For Python dependencies.
Create requirements.txt
…when downloading data
Bug fix: install_tools.sh
Pull request tj update
Small edits on README.md
Attila's contribution to the install script.
Some bug fixes of variant calling pipeline & Add new job script templates
NOTE: This workflow does not use PON. Should be implemented in the future. Added variant calling scripts 1 and 2 for calling and filtering. Added GATK4 and gnomAD VCF to set up. Tested on AWS EC2 m5d.xlarge with Moran WES BAM 6:96076198-96096198.
Added GATK4 and gnomAD VCF to set up.
Mutect2 single sample workflow
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