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BWA update update - #2

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boegel merged 9 commits into
boegel:BWA_updatefrom
fgeorgatos:BWA_update_update
Oct 2, 2013
Merged

BWA update update#2
boegel merged 9 commits into
boegel:BWA_updatefrom
fgeorgatos:BWA_update_update

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@fgeorgatos

@fgeorgatos fgeorgatos commented Sep 30, 2013

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check commit 5bf3344

boegel and others added 9 commits September 12, 2013 08:47
@boegel
correct easyconfigs unit test w.r.t. support for alternative module n…
117fac4 
…aming schemes
@boegel
fix toolchain spec and filename for HPCBIOS_Profilers and HPCBIOS_Deb…
05deccc 
…uggers easyconfigs
@boegel
fix dependency specifications, i.e. stop including toolchain in versi…
05a19c9 
…on(suffix) such that non-EasyBuild module naming schemes can be used too
@boegel
Merge branch 'develop' into module_naming_scheme
e996c23
@boegel
fix unit tests w.r.t. renamed dict key
5288fa7
@boegel
fix remarks
7e209bb
@boegel
Merge pull request easybuilders#431 from boegel/module_naming_scheme
1363828 
correct bugs in dependency specifications and fix easyconfigs unit tests
@fgeorgatos
Merge branch 'BWA_update' of https://github.com/boegel/easybuild-easy…
a446a4e 
…configs into BWA_update_update
@fgeorgatos
add BWA-0.7.4-ictce-5.3.0.eb
5bf3344 
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
@fgeorgatos

fgeorgatos commented Sep 30, 2013

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it's basically just adding easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb;
the rest should go away after your sync with develop branch...

@boegel

boegel commented Oct 2, 2013

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Thanks!

boegel added a commit that referenced this pull request Oct 2, 2013
@boegel
Merge pull request #2 from fgeorgatos/BWA_update_update
306819b 
BWA update update
@boegel
boegel merged commit 306819b into boegel:BWA_update Oct 2, 2013
boegel pushed a commit that referenced this pull request Oct 2, 2013
@wpoely86
Merge pull request #2 from boegel/clang33
e68db54 
use %(version)s
boegel pushed a commit that referenced this pull request Oct 19, 2013
Bart Verleye
Merge pull request #2 from boegel/adding_gmpolf
8b4b02d 
add gzip easyconfig for gmpolf toolchain, clean up comments in gmpolf toolchain
@fgeorgatos
fgeorgatos deleted the BWA_update_update branch November 25, 2013 22:04
boegel pushed a commit that referenced this pull request Nov 30, 2013
@ajdecon
Merge pull request #2 from boegel/ompi_os_deps
af67ec5 
apply OS-dependent list of os deps consistently across OpenMPI easyconfigs + style fixes (double spaces)
boegel pushed a commit that referenced this pull request Dec 17, 2013
@tovrstra
Merge pull request #2 from boegel/nanocourse
a833d24 
Thanks for the fixes. Looks good!
boegel pushed a commit that referenced this pull request Jan 22, 2014
@fgeorgatos
replace with GNU_SOURCE where needed, round #2
f8e71d8 
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
boegel pushed a commit that referenced this pull request May 22, 2014
@carsten-clauss
Merge pull request #2 from boegel/parastation_configs
8fa0891 
resolve version issue via creating of a VERSION file through premakeopts, enforce non-parallel build
boegel pushed a commit that referenced this pull request Sep 10, 2014
Balázs Hajgató
Merge pull request #2 from boegel/contrib_nwchem_6.3_intel2014b
892254c 
sync with develop
boegel pushed a commit that referenced this pull request Dec 17, 2014
@itkovian
Merge pull request #2 from boegel/ghc-7.8.3
0c22e7d 
style cleanup in GHC easyconfigs
boegel pushed a commit that referenced this pull request Dec 17, 2014
@rjeschmi
Merge pull request #2 from boegel/samtools-1.1-foss-2014b
844c239 
add missing zlib 1.2.7 foss/2014b easyconfig
boegel pushed a commit that referenced this pull request Jan 22, 2015
@gjbex
Merge pull request #2 from boegel/feature/foss_libs
8134496 
style fix in comment w.r.t. Python extensions version update
boegel pushed a commit that referenced this pull request Apr 29, 2015
@pforai
Merge pull request #2 from boegel/cray_tc_configs
40bb88d 
specify fftw dep in Cray toolchain easyconfigs as an external dep
boegel pushed a commit that referenced this pull request Jun 1, 2015
@tloizou
Merge pull request #2 from boegel/contrib_pBWA
7b694e0 
style fixes in pBWA easyconfig
boegel pushed a commit that referenced this pull request Jul 8, 2015
@omula
Merge pull request #2 from boegel/nemo
761d421 
add IC3 versionsuffix to NEMO easyconfig, clarify add_keys/del_keys
boegel pushed a commit that referenced this pull request Jul 14, 2015
ocaisa
Merge pull request #2 from boegel/ocaisa_patch-2
eddf3be 
rename BuildEnv-defaults to buildenv-default
boegel pushed a commit that referenced this pull request Aug 14, 2015
@npklein
Merge pull request #2 from boegel/Ghostscript-9.16-goolf-1.7.2
67b2d96 
use GLib 2.44.1 (stable) rather than 2.45.x (development)
boegel pushed a commit that referenced this pull request Aug 18, 2015
@verdurin
Merge pull request #2 from boegel/1851_bioconductor_bundle_updates
391f6bd 
fix versions for Bioconductor pkgs rtracklayer, GenomicFeatures, VariantAnnotation
boegel pushed a commit that referenced this pull request Apr 19, 2018
@JackPerdue
Merge pull request #2 from boegel/20180418073723_new_pr_FriBidi102
cbced18 
add missing pkg-config build dep for FriBidi
boegel pushed a commit that referenced this pull request May 22, 2018
@JackPerdue
secure URL #2
9296c6c
boegel pushed a commit that referenced this pull request Aug 14, 2018
@edmondac
Merge pull request #2 from boegel/bioconductor-3.7-iomkl
079c0e2 
generalise filter for deps mentioned in versionsuffix in test for dependency variants
boegel pushed a commit that referenced this pull request Aug 15, 2018
@fizwit
Merge pull request #2 from boegel/libjpeg-turbo-2.0
7eaac6c 
fix tiny style issue in libjpeg-turbo 2.0.0 easyconfig +  remove NASM easyconfig in faulty location
boegel pushed a commit that referenced this pull request Sep 22, 2018
@damianam
Merge pull request #2 from boegel/20180920145217_new_pr_X1120180604
2cae5e9 
reset sources for easyconfigs using Bundle in check_sha256_checksums test method
boegel pushed a commit that referenced this pull request Sep 23, 2018
@casparvl
Merge pull request #2 from boegel/20180905150301_new_pr_R343
593c3bd 
also fix checksums for rngtools & RcppProgress in R 3.4.3 easyconfigs
boegel pushed a commit that referenced this pull request Mar 2, 2019
@vanzod
Merge pull request #2 from akesandgren/fix-buffers-in-Amber-nab
590540d 
Update the fix in nab.c for fixed sized buffers.
boegel pushed a commit that referenced this pull request Dec 24, 2019
manifest
Merge pull request #2 from easybuilders/develop
7d19821 
Sync
boegel pushed a commit that referenced this pull request Mar 1, 2020
manifest
Merge pull request #2 from DeepThoughtHPC/Sal
335958e 
Sal
boegel pushed a commit that referenced this pull request Apr 9, 2020
Sebastien Varrette
Merge pull request #2 from lexming/tbboneapi
6762db2 
Update sources of all easyconfigs of tbb using the github project
boegel pushed a commit that referenced this pull request Aug 3, 2020
@Darkless012
Merge pull request #2 from boegel/20200603120442_new_pr_LiBis20200428
d210453 
update to MOABS 1.3.9.6, can use ConfigureMake easyblock now, and Boost is a required dependency
verdurin pushed a commit that referenced this pull request Nov 3, 2020
@Micket
Merge pull request #2 from boegel/20201030175409_new_pr_Geant4106
105b979 
consistently fix source_urls and homepage in Geant4 easyconfigs
boegel pushed a commit that referenced this pull request Dec 29, 2020
@schiotz
Merge pull request #2 from lexming/ASE-GPAW-fixes
a15f272 
Suggestions for PR on ASE, GPAW and spglib-python
boegel pushed a commit that referenced this pull request Jan 9, 2021
Theofilos Manitaras
Merge pull request #2 from boegel/reframe/3.3
80be26c 
add 'external' subdirectory to $PYTHONPATH for ReFrame v3.3, since bootstrap script installs required Python packages there
boegel pushed a commit that referenced this pull request Mar 10, 2021
@zdemat
Merge pull request #2 from easybuilders/develop
07dc1c7 
pull upstream
boegel pushed a commit that referenced this pull request Apr 16, 2021
@stevecdavis
Merge pull request #2 from lexming/p4
9ebec66 
Suggested changes for your PR
boegel pushed a commit that referenced this pull request Jun 17, 2021
@branfosj
Merge pull request #2 from akesandgren/fix_amber20_usempi_problem
053d18d 
AmberTools/20: Fix problems with CMake and usempi.
boegel pushed a commit that referenced this pull request Aug 20, 2021
@deniskristak
Merge pull request #2 from lexming/snippy-fix
becd1a3 
Fixes for wgsim and snippy
boegel pushed a commit that referenced this pull request Aug 27, 2021
@Flamefire
Merge pull request #2 from boegel/20210817193505_new_pr_jax0219
0e65468 
add patches for jaxlib and jax to fix/skip failing tests + use 'CUDA_VISIBLE_DEVICES=0 JAX_ENABLE_X64=true' for running jax tests
lexming pushed a commit that referenced this pull request Dec 15, 2021
@smoretti
Merge pull request #2 from boegel/20211210113441_new_pr_Rgurobi950
f062e59 
add custom sanity check command for Rgurobi
boegel pushed a commit that referenced this pull request Jan 12, 2022
@surak
Merge pull request #2 from boegel/20220104163908_new_pr_Bazel372
aa93291 
rename patch files required for building Bazel 3.7.2 with GCCcore/11.2.0 + Java/15
boegel pushed a commit that referenced this pull request Feb 21, 2022
@hmeiland
Merge pull request #2 from hmeiland/20220212092959_new_pr_devito461
384f5f7 
20220212092959 new pr devito461
boegel pushed a commit that referenced this pull request Jan 2, 2023
@crubb
adding easyconfigs: gh-2.20.2.eb
fee31cc
boegel pushed a commit that referenced this pull request Oct 18, 2023
@lexming
Merge pull request #2 from boegel/snap-esa
16f4f3b 
use Java/1.8 wrapper for SNAP-ESA and SNAP-ESA-python + take into account that `$JAVA_TOOL_OPTIONS` may not be defined + add modtclfooter equivalent to modluafooter
boegel pushed a commit that referenced this pull request Jan 30, 2024
@WilleBell
Merge pull request #2 from lexming/monai130
c54e7c7 
Suggested changes for MONAI v1.3.0
boegel pushed a commit that referenced this pull request Jun 10, 2024
@lcniel
Merge pull request #2 from Flamefire/pyiron
03579d1 
Improvements for PyIron
boegel pushed a commit that referenced this pull request Aug 2, 2024
@ThomasHoffmann77
Merge pull request #2 from Flamefire/jax_improvements
dc112fc 
Fix usage of system Pybind11
boegel pushed a commit that referenced this pull request Aug 2, 2024
@Micket c3-builder
adding easyconfigs: gh-2.52.0.eb
658fb09
boegel pushed a commit that referenced this pull request Jan 23, 2026
@Thyre
Merge pull request #2 from bedroge/rocm_llvm_641_float128_patch
448d667 
add additional patch for ROCm-LLVM 19.0.0
boegel pushed a commit that referenced this pull request Feb 19, 2026
Anibal Moreno
adding easyconfigs: Go-1.25.7.eb, gh-2.86.0.eb
2205ca1
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2 participants

@fgeorgatos @boegel