Biotite 1.6.0

Changelog

Additions

• Added support for Linux ARM 64 (aarch64) builds. (#851)
• Added structure.filter_heavy() to filter non-hydrogen atoms. (#845)
• Added sequence.io.fasta.get_a3m_alignments() and sequence.io.fasta.set_a3m_alignments() for reading and writing alignments in A3M format. (#848)
• Improved performance for database.rcsb.fetch()
  • Added support for gzipped downloads via new gzip parameter. (#841)
  • Fetching multiple entries uses a persistent HTTP connections to speed up multiple consecutive downloads. (#842)
  • Removed time consuming error response checking. (#852)
• Improved efficiency of structure.filter_intersection(). (#849)

Changes

• String representations of structure.AtomArray and structure.AtomArrayStack are now abbreviated to improve readability for large structures. (#835)

Fixes

• Fixed structure.find_stacking_interactions() and find_pi_cation_interactions() somteimes miss interaction. (#839)
• Fixed unnecessary numpy.ndarray initialization when and structure.AtomArray or structure.AtomArrayStack is indexed. (#840)
• Fixed structure.io.pdbx.get_assembly() removing inter-chain bonds. (#843)
• Fixed compatibility with numpy >= 2.4. (#850)