Add fetching from the AlphaFold structure database#492
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padix-key merged 9 commits intobiotite-dev:mainfrom Feb 2, 2025
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Add fetching from the AlphaFold structure database#492padix-key merged 9 commits intobiotite-dev:mainfrom
padix-key merged 9 commits intobiotite-dev:mainfrom
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Hi, thanks for implementing this long sought feature request. I know this is only a draft, but I had some time for review, so I can already share some thoughts 😃.
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Hi, are you planning to continue work on this PR? If not, I could finish the AFDB interface. |
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Would be amazing if you’d finish it up @padix-key |
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- add module for fetching from AlphaFold DB - add tests for module - more to come
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CodSpeed Performance ReportMerging #492 will not alter performanceComparing Summary
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This PR adds the ability to fetch databases from the AlphaFold structure database by querying on UniProt accession
biotite.database.alphafoldmodule for fetching structures via UniProt accessiontests/database/test_alphafold.py