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Merge pull request #1 from asonnens/master
idworkin Apr 10, 2015
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Updated Readme, for publication
idworkin May 11, 2015
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Update README.md
idworkin May 11, 2015
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idworkin May 15, 2015
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updated link to paper
idworkin May 21, 2015
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idworkin May 22, 2015
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21 changes: 16 additions & 5 deletions README.md
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This is a repository for a [BEACON](beacon-center.org) funded project to generate a database of images from the wings of *Drosophila melanogaster* to be used for biometric analysis. This work was performed by Anne Sonnenschein & Sudarshan Chari under the mentorship of Dr. Ian Dworkin and in collaboration with Dr. Gerry Dozier and Kaushik Roy at NC A&T. This repository contains scripts, some basic tutorials (for the students doing the project as well as everyone else) as well as landmark data.
The raw images will be up in a public repository with GigaDB and Gigascience (gigadb.org).
This is a repository for with all scripts and data for the paper:
Anne Sonnenschein; David VanderZee; William R. Pitchers; Sudarshan Chari; Ian Dworkin.(2015). An Image Database of *Drosophila melanogaster* Wings for Phenomic and Biometric analysis. GigaScience. http://dx.doi.org/10.5524/100141.
The manuscript is available online (open access) [here](http://www.gigasciencejournal.com/content/4/1/25)

All of the raw data (including images, landmark coordinate files, scripts and BioCat settings) are available on GigaDB. The temporary link is here (http://gigadb.org/dataset/view/id/100141/token/9RIJbfKlm1FQMW2e).


This repository includes

1. Some tutorials and run throughs with practice data for lda, qda,...
2. The real scripts used for the analyses.
3. Landmark data used for the real study.
1. [Scripts used for the analyses in the paper.](https://github.com/DworkinLab/Wing_Biometrics_2015/tree/master/scripts)
2. [Landmark data used for real study.](https://github.com/DworkinLab/Wing_Biometrics_2015/tree/master/data)
3. [Some old tutorials, practice data and run throughs](https://github.com/DworkinLab/Wing_Biometrics_2015/tree/master/Dworkin_machine_learning_in_R_tutorials) with practice data for lda, qda.
4. Maybe some easter eggs..

We have extended readme files on the gigascience database (see above), but some short notes about the files are available [here](https://github.com/DworkinLab/Wing_Biometrics_2015/blob/master/Wing_Biometrics_readme.txt).

This work was funded by a [BEACON](http://beacon-center.org) funded project to Ian Dworkin to generate a database of images from the wings of *Drosophila melanogaster* to be used for biometric analysis.This material is based in part upon work supported by the National Science Foundation under Cooperative Agreement No. DBI-0939454. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.