chore: Bump dependencies pygments and fastmcp

pyproject.toml

@@ -125,7 +125,7 @@ dependencies = [
     "truststore>=0.10.4,<1",
     "urllib3>=2.6.3,<3", # CVE-2026-21441 requires >= 2.6.3
     "wsidicom>=0.28.1,<1",
-    "fastmcp>=3.0.0,<4",
+    "fastmcp>=3.2.0,<4",
     # Transitive overrides
     # WARNING: one cannot negate or downgrade a dependency required here. use override-dependencies for that.
     "rfc3987; sys_platform == 'never'", # GPLv3
@@ -208,7 +208,7 @@ dev = [
     "watchdog>=6.0.0,<7",
     # Transitive overrides
     # WARNING: one cannot negate or downgrade a dependency required here. use override-dependencies for that.
-    "pip>=5.3",                         # CVE-2025-8869  
+    "pip>=5.3",                         # CVE-2025-8869
     "uv>=0.9.7",                        # CVE-2025-54368, GHSA-w476-p2h3-79g9, GHSA-pqhf-p39g-3x64
     "fonttools>=4.60.2",                # CVE-2025-66034 (GHSA-768j-98cg-p3fv), dep of matplotlib
 ]
@@ -348,7 +348,7 @@ addopts = "-p nicegui.testing.plugin -v --strict-markers --log-disable=aignostic
 asyncio_mode = "auto"
 asyncio_default_fixture_loop_scope = "function"
 timeout = 10 # We use a rather short default timeout. Override with @pytest.mark.timeout(timeout=N)
-# timeout_method="signal" 
+# timeout_method="signal"
 env = [
     "COVERAGE_FILE=.coverage",
     "COVERAGE_PROCESS_START=pyproject.toml",

specifications/SPEC-UTILS-SERVICE.md

@@ -260,7 +260,7 @@ uvx aignostics [module-name] [subcommand] [options]
 | `nicegui`           | ^1.0        | GUI framework support              | Optional          | CLI-only mode              |
 | `logfire`           | ^0.41       | Observability and monitoring       | Optional          | Standard logging           |
 | `sentry-sdk`        | ^2.0        | Error tracking and performance     | Optional          | Local error handling       |
-| `fastmcp`           | >=2.0,<3    | MCP server framework               | Required          | N/A - MCP functionality    |
+| `fastmcp`           | >=3.2,<4    | MCP server framework               | Required          | N/A - MCP functionality    |
 | `marimo`            | ^0.8        | Notebook utilities                 | Optional          | Notebook features disabled |
 
 _Note: For exact version requirements, refer to `pyproject.toml` and dependency lock files._
@@ -367,18 +367,18 @@ _Note: For exact version requirements, refer to `pyproject.toml` and dependency
 
 ### Verification and Updates
 
-**Last Verified**: September 11, 2025  
-**Verification Method**: Code review against implementation in `src/aignostics/utils/`  
+**Last Verified**: September 11, 2025
+**Verification Method**: Code review against implementation in `src/aignostics/utils/`
 **Next Review Date**: December 11, 2025
 
 ### Change Management
 
-**Interface Changes**: Changes to BaseService or BasePageBuilder APIs require spec updates and version bumps  
-**Implementation Changes**: Internal discovery algorithms don't require spec updates unless behavior changes  
+**Interface Changes**: Changes to BaseService or BasePageBuilder APIs require spec updates and version bumps
+**Implementation Changes**: Internal discovery algorithms don't require spec updates unless behavior changes
 **Dependency Changes**: Optional dependency changes should be reflected in fallback behavior section
 
 ### References
 
-**Implementation**: See `src/aignostics/utils/` for current implementation  
-**Tests**: See `tests/aignostics/utils/` for usage examples and verification  
+**Implementation**: See `src/aignostics/utils/` for current implementation
+**Tests**: See `tests/aignostics/utils/` for usage examples and verification
 **API Documentation**: Auto-generated from docstrings and type hints

tests/resources/mcp_dummy_plugin/pyproject.toml

@@ -7,7 +7,7 @@ name = "mcp-dummy-plugin"
 version = "0.0.1"
 description = "Dummy MCP plugin for integration testing of plugin auto-discovery."
 requires-python = ">=3.11"
-dependencies = ["fastmcp>=3.0.0,<4", "typer>=0.12", "aignostics"]
+dependencies = ["fastmcp>=3.2.0,<4", "typer>=0.12", "aignostics"]
 
 [project.entry-points."aignostics.plugins"]
 mcp_dummy_plugin = "mcp_dummy_plugin"