Skip to content

v4.3.0

Choose a tag to compare

View all tags
@coalsont coalsont released this 08 Feb 17:07
v4.3.0
716e9f4

This release will be used for processing of the HCP-Lifespan (Development and Aging) and Connectomes Related to Human Disease projects going forward.

Main new features:

  • Added a Workbench scene for Structural QC (with some automatically generated snapshots) (#201)
  • Added a Workbench scene for fMRI QC (with some automatically generated snapshots) (#203)
  • Added option for distortion correction using Philips fieldmaps (#191, #194)
  • Added option to DiffPreproc (--select-best-b0) to select the "best" (least-distorted) for each phase-encoding direction as input to topup (#158, #198)

Other additions:

  • Added options in DeDriftAndResample to extract a subset of the runs from multi-run FIX into a new concatenated series (#182)
  • Added a single mode of RSNregression, to apply just temporal regression (#170)
  • Added option to OneStepResampling (--wb-resample) for future wb_command -volume-resample resampling of timeseries (to replace slow fslsplit/convertwarp/applywarp/fslmerge code) (#173). Not enabled yet, as not yet supported by public Workbench release.

Bug fixes/changes:

  • Fix incorrect column header names in stats file (MissingGrayordinates.2.txt) that quantifies overlap between subject ROIs and Atlas (f4afdc5 and 64971e3)
  • 91282 template updated to cifti-2 format (e2d5bba)
  • Some minor diffusion bug fixes/enhancements (#192, #193, #199, #202)
  • Catch command errors in DeDriftAndResample (716e9f4). (Need to review error trapping across all scripts at some point...)

Known Issues:

  • Testing revealed that using Octave mode for multi-run ICA-FIX does not always stably converge. Using Octave mode for multi-run ICA-FIX is not advised at this time.
  • Input NIFTI files with a TR that does not use units of seconds result in incorrect TR of outputs - please set the TR in units of seconds before processing (#124)
Assets 2
Loading