Moved all experimental code including tests into research folder.

.github/workflows/ExperimentalTests.yml

@@ -1,4 +1,4 @@
-name: IntegrationTests
+name: TestExperimentalFeatures
 
 on:
   push:

Project.toml

@@ -4,7 +4,6 @@ version = "0.4"
 
 [deps]
 AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
-AdaptiveRejectionSampling = "c75e803d-635f-53bd-ab7d-544e482d8c75"
 ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 InplaceOps = "505f98c9-085e-5b2c-8e89-488be7bf1f34"

research/Project.toml

@@ -0,0 +1,28 @@
+[deps]
+AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
+AdaptiveRejectionSampling = "c75e803d-635f-53bd-ab7d-544e482d8c75"
+ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
+DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
+InplaceOps = "505f98c9-085e-5b2c-8e89-488be7bf1f34"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+Requires = "ae029012-a4dd-5104-9daa-d747884805df"
+Setfield = "efcf1570-3423-57d1-acb7-fd33fddbac46"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
+StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
+
+[compat]
+AbstractMCMC = "3.2, 4"
+ArgCheck = "1, 2"
+DocStringExtensions = "0.8, 0.9"
+InplaceOps = "0.3"
+ProgressMeter = "1"
+Requires = "0.5, 1"
+Setfield = "0.7, 0.8, 1"
+StatsBase = "0.31, 0.32, 0.33"
+StatsFuns = "0.8, 0.9, 1"
+UnPack = "1"
+julia = "1"

research/README.md

@@ -0,0 +1,8 @@
+In order to use algorithms in this folder, please navigate to the AdvancedHMC folder and run
+
+
+```
+] activate research/
+] develop src/
+] instantiate
+ ```

src/experimental/relativistic_hmc.jl → research/src/relativistic_hmc.jl

@@ -1,3 +1,7 @@
+using AdvancedHMC
+import AdvancedHMC: ∂H∂r, neg_energy, AbstractKinetic
+import Random: AbstractRNG
+
 struct RelativisticKinetic{T} <: AbstractKinetic
     "Mass"
     m::T

test/experimental/relativistic_hmc.jl → research/tests/relativistic_hmc.jl

@@ -1,6 +1,5 @@
 using ReTest, AdvancedHMC
 using AdvancedHMC
-using AdvancedHMC: RelativisticKinetic
 using LinearAlgebra: dot
 
 @testset "Hamiltonian" begin
@@ -9,4 +8,4 @@ using LinearAlgebra: dot
     metric = UnitEuclideanMetric(10)
     h = Hamiltonian(metric, RelativisticKinetic(1.0, 1.0), f, g)
     @test h.kinetic isa RelativisticKinetic
-end
+end

test/experimental/runtests.jl → research/tests/runtests.jl

@@ -1,5 +1,9 @@
 using ReTest
 
+# include the source code for relativistic HMC
+include("../src/relativistic_hmc.jl")
+
+# include the tests for relativistic HMC
 include("relativistic_hmc.jl")
 
 @main function runtests(patterns...; dry::Bool=false)

src/AdvancedHMC.jl

@@ -143,8 +143,6 @@ export DifferentiableDensityModel
 
 include("contrib/ad.jl")
 
-include("experimental/relativistic_hmc.jl")
-
 ### Init
 
 using Requires

test/runtests.jl

@@ -34,7 +34,12 @@ if GROUP == "All" || GROUP == "AdvancedHMC"
 end
 
 if GROUP == "All" || GROUP == "Experimental"
-    include(joinpath("experimental", "runtests.jl"))
+    using Pkg
+     # activate separate test environment
+     Pkg.activate(joinpath(DIRECTORY_AdvancedHMC, "research"))
+     Pkg.develop(PackageSpec(; path=DIRECTORY_AdvancedHMC))
+     Pkg.instantiate()
+    include(joinpath(DIRECTORY_AdvancedHMC, "research/tests", "runtests.jl"))
 end
 
 if GROUP == "All" || GROUP == "Downstream"