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@wyli wyli released this 13 Jun 18:12
· 1294 commits to main since this release
0.9.0
af0e0e9
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Learn about vigilant mode.

Added

  • monai.bundle primary module with a ConfigParser and command-line interfaces for config-based workflows
  • Initial release of MONAI bundle specification
  • Initial release of volumetric image detection modules including bounding boxes handling, RetinaNet-based architectures
  • API preview monai.data.MetaTensor
  • Unified monai.data.image_writer to support flexible IO backends including an ITK writer
  • Various new network blocks and architectures including SwinUNETR
  • DeepEdit interactive training/validation workflow
  • NuClick interactive segmentation transforms
  • Patch-based readers and datasets for whole-slide imaging
  • New losses and metrics including SurfaceDiceMetric, GeneralizedDiceFocalLoss
  • New pre-processing transforms including RandIntensityRemap, SpatialResample
  • Multi-output and slice-based inference for SlidingWindowInferer
  • NrrdReader for NRRD file support
  • Torchscript utilities to save models with meta information
  • Gradient-based visualization module SmoothGrad
  • Automatic regular source code scanning for common vulnerabilities and coding errors

Changed

  • Simplified TestTimeAugmentation using de-collate and invertible transforms APIs
  • Refactoring monai.apps.pathology modules into monai.handlers and monai.transforms
  • Flexible activation and normalization layers for TopologySearch and DiNTS
  • Anisotropic first layers for 3D resnet
  • Flexible ordering of activation, normalization in UNet
  • Enhanced performance of connected-components analysis using Cupy
  • INSTANCE_NVFUSER for enhanced performance in 3D instance norm
  • Support of string representation of dtype in convert_data_type
  • Added new options iteration_log, iteration_log to the logging handlers
  • Base Docker image upgraded to nvcr.io/nvidia/pytorch:22.04-py3 from nvcr.io/nvidia/pytorch:21.10-py3
  • collate_fn generates more data-related debugging info with dev_collate

Fixed

  • Unified the spellings of "meta data", "metadata", "meta-data" to "metadata"
  • Various inaccurate error messages when input data are in invalid shapes
  • Issue of computing symmetric distances in compute_average_surface_distance
  • Unnecessary layer self.conv3 in UnetResBlock
  • Issue of torchscript compatibility for ViT and self-attention blocks
  • Issue of hidden layers in UNETR
  • allow_smaller in spatial cropping transforms
  • Antialiasing in Resize
  • Issue of bending energy loss value at different resolutions
  • kwargs_read_csv in CSVDataset
  • In-place modification in Metric reduction
  • wrap_array for ensure_tuple
  • Contribution guide for introducing new third-party dependencies

Removed

  • Deprecated nifti_writer, png_writer in favor of monai.data.image_writer
  • Support for PyTorch 1.6
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