Code for parsing Personal Genome Project survey data.
Included in the surveys_20140919 directory are copies of survey data from Sep 19 2014. You can upload new copies of these surveys from the PGP site.
PGP Participant Survey:
PGP Trait & Disease Surveys:
- https://my.pgp-hms.org/google_surveys/6
- https://my.pgp-hms.org/google_surveys/7
- https://my.pgp-hms.org/google_surveys/8
- https://my.pgp-hms.org/google_surveys/9
- https://my.pgp-hms.org/google_surveys/10
- https://my.pgp-hms.org/google_surveys/11
- https://my.pgp-hms.org/google_surveys/12
- https://my.pgp-hms.org/google_surveys/13
- https://my.pgp-hms.org/google_surveys/14
- https://my.pgp-hms.org/google_surveys/15
- https://my.pgp-hms.org/google_surveys/16
- https://my.pgp-hms.org/google_surveys/17
The code in demo.py is included as an example. It can be run with
python demo.py and outputs some tab-separated data associating traits with
participant identifiers to stdout. There are other data in the surveys not
presented in this parsed output; demo.py is simply included as a
demonstration of usage of pgp_survey.py.
Also, all_surveys_completed.py is quick personal program I use to quickly generate a list of all participants that have completed all surveys.