Experiment: CDS from different evolutionary timescales #58
Description
Description
Similar to #55 but for CDS.
Perhaps train for 17k steps rather than a full epoch.
Links
Training code
Analysis code
Wandb: mammals, vertebrates, animals
Results
Eval: TraitGym Mendelian traits v2 (validation set, only odd chromosomes).
- For missense variants, shorter timescales work better initially but the longer timescales surpass them in the end. Animals seems to be the optimal one.
- For synonymous and splicing variants, there seems to be less differences between models.
