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Have a folder under docs called decisions which records architecture decisions

Status: Open.

#26 In NBISweden/biovat;

· mahesh-panchal opened on Jul 31, 2026

Compile datasets for testing

enhancementNew feature or requestNew feature or request

Status: Open.

#24 In NBISweden/biovat;

· verku opened on Jun 3, 2026

·  

TDP 2: core pipeline finalized

Which analyses should be bundled as Quarto Notebooks?

questionFurther information is requestedFurther information is requested

Status: Open.

#23 In NBISweden/biovat;

· mahesh-panchal opened on Jun 3, 2026

Feature Request: Create an Example/Template Repository for Workflow Analyses

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In NBISweden/biovat;

· mahesh-panchal opened on Jun 3, 2026

Ensure all process use conda lock files instead of environment files

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In NBISweden/biovat;

· mahesh-panchal opened on Jun 3, 2026

Set up protection for main branch

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Pipeline setup

Set up issue and pull request templates

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Pipeline setup

Build a documentation website

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#16 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

TDP 4: pipeline launch (end delivery)

Implement subworkflow for LD and recombination rate estimates (whole genome re-sequencing data)

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Stage 4: population genomics downstream analyses for whole genome re-sequencing data

Implement subworkflow for selection analyses (whole genome re-sequencing data)

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Stage 4: population genomics downstream analyses for whole genome re-sequencing data

Implement subworkflow for demography analyses (whole genome re-sequencing data)

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Stage 4: population genomics downstream analyses for whole genome re-sequencing data

Implement subworkflow(s) for population structure analyses (whole genome resequencing data)

enhancementNew feature or requestNew feature or request

Status: Open.

#12 In NBISweden/biovat;

· verku opened on Jun 2, 2026

·  

Stage 4: population genomics downstream analyses for whole genome re-sequencing data