Merge 3.0.5 into dev#3101

Merged

Lestropie merged 170 commits intodevfrom

Sep 4, 2025

Commits on Dec 3, 2021

5ttcheck: Fix terminal message RE: -voxels option
Lestropie
committed

Commits on Jan 10, 2023

Fix for mrview / singularity / NVIDIA
celstark
authored

Commits on Mar 14, 2023

Commits on Mar 22, 2023

Commits on Mar 24, 2023

fsl.check_first(): Use dummy fsl_sub job to detect completion
Lestropie
committed

Commits on Mar 27, 2023

fsl.check_first(): pylint fixes
Lestropie
committed

Commits on May 21, 2023

fod2fixel: Fix -fmls_lobe_merge_ratio
Lestropie
committed

Commits on Aug 11, 2023

Docs: Fix missing boolean types in full usage
Lestropie
committed

Commits on Aug 29, 2023

mrinfo: Update author email
Lestropie
committed

Commits on Sep 25, 2023

for_each: Add example usage demonstrating shell operator escape
Lestropie
committed

Commits on Oct 11, 2023

configure: strip FSL from PATH
jdtournier
committed

Commits on Dec 4, 2023

DICOM: add null imageIO handler to allow parsing of DICOM data even with unsupported transfer syntax
jdtournier
committed

Commits on Dec 5, 2023

Fix indentation in core/file/dicom/mapper.cpp

jdtournier
and
Lestropie
authored

Commits on Dec 13, 2023

Reslice adapter: allow use with complex numbers
jdtournier
committed

Commits on Jan 29, 2024

dwifslpreproc: Fix for PE direction, but not readout time, in header
Lestropie
committed

Commits on Jan 31, 2024

mrgrid: Fix help for -as option
Lestropie
committed

Commits on Feb 13, 2024

run.command(): Do not hide list inputs
Lestropie
committed

Commits on Mar 5, 2024

Merge branch 'master' into allow_DICOM_header_read_with_unsupported_transfer_syntax
jdtournier
authored

Commits on Mar 11, 2024

Add nightly checks with sanitizers
daljit46
committed

Commits on May 2, 2024

Commits on May 13, 2024

-json_export: Fix slice encoding direction sign
Lestropie
committed

Commits on May 15, 2024

Commits on May 20, 2024

Commits on May 28, 2024

Commits on Jun 8, 2024

Commits on Jun 19, 2024

Commits on Jun 20, 2024

Commits on Jun 24, 2024

Don't corrupt LD_LIBRARY_PATH with FSL content
Lestropie
committed

Commits on Jul 1, 2024

Remove extension from artefact names
daljit46
committed

Commits on Jul 10, 2024

Merge pull request #2933 from MRtrix3/releases
daljit46
authored

Commits on Jul 30, 2024

Deprecated distutils module in Python 3.12
Lestropie
committed

Commits on Jul 31, 2024

Merge pull request #2948 from MRtrix3/no_distutils
Lestropie
authored

Commits on Aug 5, 2024

dwi2tensor: Preserve dw_scheme for -predicted_signal
Lestropie
committed

Commits on Aug 14, 2024

Windows: Delayed writeback to host
Lestropie
committed

Commits on Aug 15, 2024

Merge pull request #2962 from MRtrix3/wsl_disable_mmap
Lestropie
authored

Commits on Aug 17, 2024

Commits on Sep 16, 2024

Commits on Sep 17, 2024

population_template: Fix aggregation weights import
Lestropie
committed

Commits on Sep 18, 2024

Commits on Sep 22, 2024

Fixes to bvecs import
Lestropie
committed

Commits on Oct 3, 2024

Minor tweaks to DWI metadata handling changes
Lestropie
committed

Commits on Oct 22, 2024

Tolerance for dw_scheme differences on header merge
Lestropie
committed

Commits on Nov 16, 2024

Commits on Nov 20, 2024

Commits on Nov 23, 2024

Commits on Nov 24, 2024

Merge pull request #2559 from celstark/celstark-patch-1
bjeurissen
authored

Commits on Dec 2, 2024

Commits on Dec 27, 2024

Commits on Jan 7, 2025

Update copyright to 2025

MRtrixBot
authored and
Lestropie
committed
Merge pull request #3054 from MRtrix3/pylint_master
Lestropie
authored

Commits on Feb 5, 2025

Commits on Feb 6, 2025

Commits on Feb 7, 2025

Commits on Feb 9, 2025

Commits on Feb 10, 2025

Merge pull request #2767 from MRtrix3/allow_DICOM_header_read_with_unsupported_transfer_syntax
Lestropie
authored

Commits on Feb 11, 2025

Merge remote-tracking branch 'origin/master' into bval_clamp_zero
Lestropie
committed

Commits on Feb 12, 2025

Commits on Feb 13, 2025

Merge pull request #3047 from MRtrix3/fix_philips_enhanced_dicom_position
Lestropie
authored

Commits on Mar 10, 2025

Fix tck writer when a single streamline exceed the buffer size
jdtournier
committed

Commits on Mar 13, 2025

Merge pull request #3071 from MRtrix3/fix_tck_writer_large_streamline
Lestropie
authored

Commits on Apr 2, 2025

Commits on Apr 3, 2025

Merge pull request #3011 from MRtrix3/dwi_metadata_master
daljit46
authored

Commits on Apr 7, 2025

Commits on Apr 8, 2025

Commits on Apr 9, 2025

Merge pull request #2602 from MRtrix3/bval_clamp_zero
daljit46
authored

Commits on Apr 24, 2025

Commits on Apr 25, 2025

Merge pull request #3086 from daljit46/fix_master_packaging
jdtournier
authored

Commits on May 21, 2025

Commits on Jun 2, 2025

Merge commit 'c4b94c437a7955d25265f46ace48afd4ad2d5f66' into 305_to_dev
Lestropie
committed

Commits on Sep 2, 2025

Merge branch 'dev' into 305_to_dev
Lestropie
committed

Commits on Sep 3, 2025