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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 7.7k 2.2k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 229

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 225 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 249 78

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 149 41

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 617 119

Repositories

Showing 10 of 111 repositories
  • MIC-DKFZ/napari-data-inspection’s past year of commit activity
    Python 7 Apache-2.0 0 0 0 Updated Dec 5, 2025
  • ViData Public
    MIC-DKFZ/ViData’s past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Dec 5, 2025
  • diabetes-xai Public
    MIC-DKFZ/diabetes-xai’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 4, 2025
  • nnunet-eucaim-docker Public

    This repository provides Docker images for running nnUNet inference in a reproducible and containerized environment, tailored for the EUCAIM project.

    MIC-DKFZ/nnunet-eucaim-docker’s past year of commit activity
    Dockerfile 0 Apache-2.0 1 0 0 Updated Dec 4, 2025
  • confly Public
    MIC-DKFZ/confly’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 3, 2025
  • ScribbleBench Public

    [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation

    MIC-DKFZ/ScribbleBench’s past year of commit activity
    Python 5 Apache-2.0 2 1 0 Updated Dec 3, 2025
  • napari-blosc2 Public
    MIC-DKFZ/napari-blosc2’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Dec 3, 2025
  • MedVol Public
    MIC-DKFZ/MedVol’s past year of commit activity
    Python 16 Apache-2.0 0 0 0 Updated Dec 3, 2025
  • tqdmp Public

    Multiprocessing with tqdm progressbars!

    MIC-DKFZ/tqdmp’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Dec 3, 2025
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 327 Apache-2.0 34 16 1 Updated Nov 28, 2025