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Merged
marcpaterno merged 1 commit into from
Jun 30, 2025
Merged

Add Augur testing to our CI #529

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88 changes: 78 additions & 10 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@ jobs:
conda activate firecrown_developer
pip install --no-deps -e .
conda list
- name: Setting up CosmoSIS
- name: Setting up CosmoSIS
shell: bash -l {0}
run: |
source ${CONDA_PREFIX}/bin/cosmosis-configure
Expand All @@ -63,11 +63,11 @@ jobs:
export CSL_DIR=${PWD}/cosmosis-standard-library
conda env config vars set CSL_DIR=${CSL_DIR}
conda activate firecrown_developer
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Setting up Cobaya
shell: bash -l {0}
run: python -m pip install cobaya
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Ensure clear Jupyter Notebooks
uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1
- name: Running black check
Expand Down Expand Up @@ -155,7 +155,7 @@ jobs:
conda activate firecrown_developer
pip install --no-deps -e .
conda list
- name: Setting up CosmoSIS
- name: Setting up CosmoSIS
shell: bash -l {0}
run: |
source ${CONDA_PREFIX}/bin/cosmosis-configure
Expand All @@ -164,18 +164,86 @@ jobs:
export CSL_DIR=${PWD}/cosmosis-standard-library
conda env config vars set CSL_DIR=${CSL_DIR}
conda activate firecrown_developer
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Setting up Cobaya
shell: bash -l {0}
run: python -m pip install cobaya
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Install Smokescreen and test it
shell: bash -l {0}
run: |
cd smokescreen
pip install -e .
python -m pytest tests/

test-augur:
name: Firecrown Augur (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge)
runs-on: ${{ matrix.os }}-latest
strategy:
fail-fast: false
matrix:
os: ["macos"]
python-version: ["3.13"]
steps:
- uses: actions/checkout@v4
- name: Cloning Augur
uses: actions/checkout@v4
with:
repository: 'lsstdesc/augur'
path: 'augur'
ref: '1.1.0'
- name: Setting up Miniforge
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
python-version: ${{ matrix.python-version }}
show-channel-urls: true
conda-remove-defaults: true
environment-file: environment.yml
activate-environment: firecrown_developer
- name: Cache date
id: get-date
run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
shell: bash
- name: Cache Conda env
uses: actions/cache@v4
with:
path: ${{ env.CONDA }}/envs
key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }}
env:
CACHE_NUMBER: 1
id: cache
- name: Setting up Firecrown
shell: bash -l {0}
run: |
export FIRECROWN_DIR=${PWD}
conda env config vars set FIRECROWN_DIR=${FIRECROWN_DIR}
conda activate firecrown_developer
pip install --no-deps -e .
conda list
- name: Setting up CosmoSIS
shell: bash -l {0}
run: |
source ${CONDA_PREFIX}/bin/cosmosis-configure
pushd ${CONDA_PREFIX}
cosmosis-build-standard-library
export CSL_DIR=${PWD}/cosmosis-standard-library
conda env config vars set CSL_DIR=${CSL_DIR}
conda activate firecrown_developer
if: steps.cache.outputs.cache-hit != 'true'
- name: Setting up Cobaya
shell: bash -l {0}
run: python -m pip install cobaya
if: steps.cache.outputs.cache-hit != 'true'
- name: Install Augurand test it
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Copilot AI Jun 27, 2025

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[nitpick] Typo in the step name. Consider updating 'Install Augurand test it' to 'Install Augur and test it'.

Suggested change
- name: Install Augurand test it
- name: Install Augur and test it

Copilot uses AI. Check for mistakes.
shell: bash -l {0}
run: |
conda install jinja2 tjpcov
cd augur
pip install -e .
python -m pytest .


firecrown-doccheck:
name: Firecrown Doc check (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge)
runs-on: ${{ matrix.os }}-latest
Expand Down Expand Up @@ -215,7 +283,7 @@ jobs:
conda activate firecrown_developer
pip install --no-deps -e .
conda list
- name: Setting up CosmoSIS
- name: Setting up CosmoSIS
shell: bash -l {0}
run: |
source ${CONDA_PREFIX}/bin/cosmosis-configure
Expand All @@ -224,15 +292,15 @@ jobs:
export CSL_DIR=${PWD}/cosmosis-standard-library
conda env config vars set CSL_DIR=${CSL_DIR}
conda activate firecrown_developer
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Setting up Cobaya
shell: bash -l {0}
run: python -m pip install cobaya
if: steps.cache.outputs.cache-hit != 'true'
if: steps.cache.outputs.cache-hit != 'true'
- name: Testing documentation build
shell: bash -l {0}
run: |
quarto render tutorial --output-dir=../docs/_static
make -C docs html
linkchecker -f linkcheckerrc docs/_build/html

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