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fix_abotic_particles_interaction_with_pyhtoplankton #95

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cese427 wants to merge 4 commits intoJuliaOcean:masterfrom
cese427:master
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fix_abotic_particles_interaction_with_pyhtoplankton #95
cese427 wants to merge 4 commits intoJuliaOcean:masterfrom
cese427:master

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@cese427 cese427 commented Nov 28, 2025

 This pull request refactors the abiotic particle interaction logic to use a new Top-K candidate approach for matching particles to phytoplankton cells, replacing the previous merge matrix method. It introduces new kernels for resetting, calculating, and consuming particle interactions, adds a capacity limit for particle uptake, and updates related model and parameter handling to support this new mechanism.

By the way, we differ the max_individuals and max_abiotics in the model in order to flexibly set the upper limits for the quantities of the two types of individuals.

@cese427 cese427 closed this Nov 28, 2025
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