Fail to compile package "BioSequence"

[aqzas]

Version:

• Julia 1.1.0

  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
�[?25l�[2K�[?25h Resolving package versions...
  Updating `~/.julia/dev/PackageCompiler/packages/BioSequences/Project.toml`
  [67c07d97] + Automa v0.8.0
  [37cfa864] + BioCore v2.0.5
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [861a8166] + Combinatorics v0.7.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [7200193e] + Twiddle v1.1.0
  [37e2e46d] + LinearAlgebra 
  [de0858da] + Printf 
  [9a3f8284] + Random 
  Updating `~/.julia/dev/PackageCompiler/packages/BioSequences/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [37cfa864] + BioCore v2.0.5
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [19ecbf4d] + Codecs v0.5.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.1.0
  [864edb3b] + DataStructures v0.15.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.5.2
  [3bb67fe8] + TranscodingStreams v0.9.4
  [7200193e] + Twiddle v1.1.0
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
 Resolving package versions...
  Updating `~/.julia/dev/PackageCompiler/packages/BioSequences/Project.toml`
  [9b87118b] + PackageCompiler v0.6.3
  [44cfe95a] + Pkg 
  Updating `~/.julia/dev/PackageCompiler/packages/BioSequences/Manifest.toml`
  [c7e460c6] + ArgParse v0.6.2
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.4
  [0862f596] + HTTPClient v0.2.1
  [b27032c2] + LibCURL v0.5.0
  [522f3ed2] + LibExpat v0.5.0
  [2ec943e9] + Libz v1.0.0
  [9b87118b] + PackageCompiler v0.6.3
  [b718987f] + TextWrap v0.3.0
  [30578b45] + URIParser v0.4.0
  [c17dfb99] + WinRPM v0.4.2

signal (11): Segmentation fault
in expression starting at /home/chensy/.julia/packages/BioSequences/7i86L/test/kmers/shuffle.jl:1
jl_static_show_x_ at /buildworker/worker/package_linux64/build/src/rtutils.c:657
jl_static_show_x at /buildworker/worker/package_linux64/build/src/rtutils.c:1030 [inlined]
jl_static_show_x_ at /buildworker/worker/package_linux64/build/src/rtutils.c:702
jl_static_show_x at /buildworker/worker/package_linux64/build/src/rtutils.c:1030 [inlined]
jl_static_show at /buildworker/worker/package_linux64/build/src/rtutils.c:1035
jl_mt_assoc_by_type at /buildworker/worker/package_linux64/build/src/gf.c:1130
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2187
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:323
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:411
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:362 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:773
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:885
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7ff0a474e2bf)
unknown function (ip: 0x66)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:894
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:764
jl_parse_eval_all at /buildworker/worker/package_linux64/build/src/ast.c:883
jl_load at /buildworker/worker/package_linux64/build/src/toplevel.c:826
include at ./boot.jl:326 [inlined]
include_relative at ./loading.jl:1038
include at ./sysimg.jl:29 [inlined]
include at /home/chensy/.julia/packages/BioSequences/7i86L/test/runtests.jl:1
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2219
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:323
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:411
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:362 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:773
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:885
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7ff0cbab617f)
unknown function (ip: 0x33)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:894
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:764
jl_eval_module_expr at /buildworker/worker/package_linux64/build/src/toplevel.c:179
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:614
jl_parse_eval_all at /buildworker/worker/package_linux64/build/src/ast.c:883
jl_load at /buildworker/worker/package_linux64/build/src/toplevel.c:826
include at ./boot.jl:326 [inlined]
include_relative at ./loading.jl:1038
include at ./sysimg.jl:29
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2219
include at ./client.jl:403
jl_fptr_trampoline at /buildworker/worker/package_linux64/build/src/gf.c:1864
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2219
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:323
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:411
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:362 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:773
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:689
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:885
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7ff0cb28a49f)
unknown function (ip: (nil))
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:894
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:764
jl_parse_eval_all at /buildworker/worker/package_linux64/build/src/ast.c:883
jl_load at /buildworker/worker/package_linux64/build/src/toplevel.c:826
include at ./boot.jl:326 [inlined]
include_relative at ./loading.jl:1038
include at ./sysimg.jl:29
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2219
exec_options at ./client.jl:267
_start at ./client.jl:436
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2219
jl_apply at /buildworker/worker/package_linux64/build/ui/../src/julia.h:1571 [inlined]
true_main at /buildworker/worker/package_linux64/build/ui/repl.c:96
main at /buildworker/worker/package_linux64/build/ui/repl.c:217
__libc_start_main at /build/eglibc-ripdx6/eglibc-2.19/csu/libc-start.c:287
_start at /home/chensy/julia-1.1.0/bin/julia (unknown line)
Allocations: 140966623 (Pool: 140931781; Big: 34842); GC: 278
[ Info: Registered package BioSequences, using already given UUID: 7e6ae17a-c86d-528c-b3b9-7f778a29fe59
ERROR: LoadError: failed process: Process(`/home/chensy/julia-1.1.0/bin/julia --compile=all --optimize=0 -g1 --trace-compile=/home/chensy/.julia/dev/PackageCompiler/packages/precompile_tmp.jl --history-file=yes --code-coverage=none --inline=yes --math-mode=ieee --handle-signals=yes --warn-overwrite=no --compile=yes --depwarn=yes --cpu-target=native --track-allocation=none --sysimage-native-code=yes --sysimage=/home/chensy/julia-1.1.0/lib/julia/sys.so -g1 --compiled-modules=yes --optimize=2 /home/chensy/.julia/dev/PackageCompiler/sysimg/run_julia_code.jl`, ProcessSignaled(11)) [0]
Stacktrace:
 [1] error(::String, ::Base.Process, ::String, ::Int64, ::String) at ./error.jl:42
 [2] pipeline_error at ./process.jl:785 [inlined]
 [3] #run#515(::Bool, ::Function, ::Cmd) at ./process.jl:726
 [4] #run_julia#1 at ./process.jl:724 [inlined]
 [5] (::getfield(PackageCompiler, Symbol("#kw##run_julia")))(::NamedTuple{(:compile, :O, :g, :trace_compile),Tuple{String,Int64,Int64,String}}, ::typeof(PackageCompiler.run_julia), ::String) at ./none:0
 [6] snoop(::Symbol, ::String, ::String, ::String, ::Bool, ::Array{Any,1}) at /home/chensy/.julia/dev/PackageCompiler/src/snooping.jl:34
 [7] (::getfield(PackageCompiler, Symbol("##35#37")){Array{Any,1},Tuple{Symbol},Dict{Any,Any},String,Dict{String,Array{Dict{String,Any},1}}})(::IOStream) at /home/chensy/.julia/dev/PackageCompiler/src/snooping.jl:124
 [8] #open#310(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(PackageCompiler, Symbol("##35#37")){Array{Any,1},Tuple{Symbol},Dict{Any,Any},String,Dict{String,Array{Dict{String,Any},1}}}, ::String, ::Vararg{String,N} where N) at ./iostream.jl:369
 [9] open at ./iostream.jl:367 [inlined]
 [10] #snoop_packages#34 at /home/chensy/.julia/dev/PackageCompiler/src/snooping.jl:110 [inlined]
 [11] #snoop_packages at ./none:0 [inlined]
 [12] #compile_package#67(::Bool, ::Bool, ::Bool, ::Nothing, ::Bool, ::Function, ::Tuple{String,String}) at /home/chensy/.julia/dev/PackageCompiler/src/PackageCompiler.jl:122
 [13] #compile_package#64 at /home/chensy/.julia/dev/PackageCompiler/src/PackageCompiler.jl:116 [inlined]
 [14] compile_package(::String) at /home/chensy/.julia/dev/PackageCompiler/src/PackageCompiler.jl:88
 [15] top-level scope at none:0
 [16] include at ./boot.jl:326 [inlined]
 [17] include_relative(::Module, ::String) at ./loading.jl:1038
 [18] include(::Module, ::String) at ./sysimg.jl:29
 [19] exec_options(::Base.JLOptions) at ./client.jl:267
 [20] _start() at ./client.jl:436
in expression starting at /home/chensy/jatt/generate_log.jl:2

[KristofferC]

Might be related to JuliaLang/julia#33590.