diamond 2.1.25

[BrewTestBot]

Created by brew bump

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Created with brew bump-formula-pr.

Details

release notes

- Improved the performance of the `cluster`, `deepclust` and `linclust` workflows.
- Fixed an issue that could cause an out-of-memory error in the clustering workflows during output generation.
- Added the option `--ext none` to skip seed extension and output seed hits instead.
- Added the option `--min-len-ratio` to set length ratio filter in mutual coverage searches.
- Improved performance of loading FASTA files, including when used as database.
- Added the option `--hamming-dist-boundary-check` to clip the hamming distance filter against sequence boundaries.
- Fixed a bug that could cause undefined behaviour in linear-mode searches with mutual coverage thresholds.
- Added the option `--keep-temp-files` to prevent deletion of temporary files.
- Added support for clustering BLAST databases.
- Temporarily removed the `recluster` workflow.
- Removed the `--qnum-offset` and `--snum-offset` options.
- Fixed an error when using the taxonomic output format with single-block database processing.

View the full release notes at https://github.com/bbuchfink/diamond/releases/tag/v2.1.25.

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