anydocker GPU app

This applet create a machine instance with GPU support and latest NVIDIA drivers and run any bash script you want using a container snapshot.

Example usage

dx run /apps/snapshot_gpu_run \
	-isnapshot=project-xxxxxxxxx:/sanpshots/snapshot.tar.gz \
	-iinput_files=project-xxxxxxxxx:/data/input_file1.tsv \
	-iinput_files=project-xxxxxxxxx:/data/input_file2.csv \
	-icmd='echo "This is a test" > /outputs/test_out.txt; ls /inputs >> /outputs/test_out.txt'

Access the data within the app

When running a command in the app:

• input files are available in /inputs folder
• output files saved to the /outputs folder are automatically uploaded to the configured destination folder in the DNANexus space
• the dx command is available in the app, so you can use it to interact with the DNANexus project filesystem if needed

Inputs

Mandatory

• snapshot: a docker file snapshot generated in DNANexus
• cmd: a command string in bash to execute in the container

Optional

• input_files: additional input files