Option to call SNPs only

[yekaizhou]

Hi,

Thanks for developing Clair3. It is really fast and accurate for small variant calling.

I am wondering if Clair3 can have the option to be more specific to call SNPs only?

Thanks!

[zhengzhenxian]

Hi,

We will try to add an option to call candidates that only pass SNP minimum AF in the next release.

Thanks!

[zhengzhenxian]

Hi,

We have added the --call_snp_only option to only call SNP only, pls feel free to have a try.

Thanks!