Documentation - conda install

[holtjma]

Hello,

I was following the instructions for building the anaconda virtual environment and encountered the following error while running Clair3:

OSError: Cannot load library <redacted>/Clair3/preprocess/realign/realigner: <redacted>/Clair3/preprocess/realign/realigner: cannot open shared object file: No such file or directory

After poking around the docker image, I noticed that these two steps were missing from the above instructions:

    g++ -std=c++14 -O1 -shared -fPIC -o realigner ssw_cpp.cpp ssw.c realigner.cpp && \
    g++ -std=c++11 -shared -fPIC -o debruijn_graph -O3 debruijn_graph.cpp && \

After running those two steps, re-running clair3 seemed to work. Just wanted to let you know so the docs could be updated.

[aquaskyline]

Thanks for the feedback, we have added them into quick_demo/illumina_quick_demo.md. We will also add a bioconda installation option to save users from some tedious installations.

[aquaskyline]

bioconda option added in v0.1-r4