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939a182
Add Earth deflection dataset
yvonnefroehlich Dec 27, 2024
53ef36d
Remove execusion permission
yvonnefroehlich Dec 27, 2024
2217bc6
Fix '_init_.py'
yvonnefroehlich Dec 27, 2024
6eb3484
Fix coding style
yvonnefroehlich Dec 27, 2024
4bb3494
Adjust minimum values for tests
yvonnefroehlich Dec 27, 2024
473496a
Adjust maximum values for tests
yvonnefroehlich Dec 27, 2024
ed1ab14
Fix index.rst
yvonnefroehlich Dec 27, 2024
294368f
Fix typos
yvonnefroehlich Dec 27, 2024
d139544
Make arguments for 'direction' parameter readable
yvonnefroehlich Dec 28, 2024
fb41536
COrrect ot 'north-south' | change parameter name from 'direction' to …
yvonnefroehlich Dec 28, 2024
fb04665
Change parameter name from 'direction' to 'component'
yvonnefroehlich Dec 28, 2024
c7cde49
Change parameter name from 'direction' to 'component'
yvonnefroehlich Dec 28, 2024
b7ceb76
Add missing word
yvonnefroehlich Dec 28, 2024
df1088c
Add white space
yvonnefroehlich Dec 28, 2024
b857d38
Improve formulation
yvonnefroehlich Dec 28, 2024
89b556e
Improve formulation
yvonnefroehlich Dec 28, 2024
93338b9
Merge branch 'main' into add-remote-earth-defl
yvonnefroehlich Dec 28, 2024
1f4f701
Merge branch 'main' into add-remote-earth-defl
yvonnefroehlich Dec 28, 2024
a46aa4c
Merge branch 'main' into add-remote-earth-defl
yvonnefroehlich Dec 29, 2024
4787928
Add not for sign of data
yvonnefroehlich Dec 30, 2024
169f0ff
Merge remote-tracking branch 'origin/add-remote-earth-defl' into add-…
yvonnefroehlich Dec 30, 2024
4c3238c
Change from "ndefl" to "north"
yvonnefroehlich Dec 30, 2024
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2 changes: 2 additions & 0 deletions doc/api/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -235,6 +235,7 @@ and store them in GMT's user data directory.
datasets.load_blue_marble
datasets.load_earth_age
datasets.load_earth_dist
datasets.load_earth_east_west_deflection
datasets.load_earth_free_air_anomaly
datasets.load_earth_geoid
datasets.load_earth_magnetic_anomaly
Expand All @@ -248,6 +249,7 @@ and store them in GMT's user data directory.
datasets.load_moon_relief
datasets.load_pluto_relief
datasets.load_venus_relief
datasets.load_earth_south_north_deflection
datasets.load_sample_data

In addition, there is also a special function to load XYZ tile maps via
Expand Down
1 change: 1 addition & 0 deletions pygmt/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@

from pygmt.datasets.earth_age import load_earth_age
from pygmt.datasets.earth_day import load_blue_marble
from pygmt.datasets.earth_deflection import load_earth_deflection
from pygmt.datasets.earth_dist import load_earth_dist
from pygmt.datasets.earth_free_air_anomaly import load_earth_free_air_anomaly
from pygmt.datasets.earth_geoid import load_earth_geoid
Expand Down
117 changes: 117 additions & 0 deletions pygmt/datasets/earth_deflection.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,117 @@
"""
Function to download the IGPP Earth east-west and south-north deflection datasets from
the GMT data server, and load as :class:`xarray.DataArray`.

The grids are available in various resolutions.
"""

from collections.abc import Sequence
from typing import Literal

import xarray as xr
from pygmt.datasets.load_remote_dataset import _load_remote_dataset

__doctest_skip__ = ["load_earth_deflection"]


def load_earth_deflection(
resolution: Literal[
"01d", "30m", "20m", "15m", "10m", "06m", "05m", "04m", "03m", "02m", "01m"
] = "01d",
region: Sequence[float] | str | None = None,
registration: Literal["gridline", "pixel", None] = None,
direction: Literal["edefl", "ndefl"] = "edefl",
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If people have a more suitable name for this new parameter, feel free to make suggestions. I just picked the "east-west deflection" dataset as default.

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I think the parameter is OK, but for the arguments, "edefl"/"ndefl" is not readable. Maybe "e"/"n" or "east"/"north" or "east_west"/"north_south", but I have to admit that I have no idea about the physical meaning of this dataset

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See comment #3728 (comment).

) -> xr.DataArray:
r"""
Load the IGPP Earth east-west and south-north deflections datasets in various
resolutions.

.. list-table::
:widths: 50 50
:header-rows: 1

* - IGPP Earth east-west deflection
- IGPP Earth south-north deflection
* - .. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_earth_edefl.jpg
- .. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_earth_ndefl.jpg

The grids are downloaded to a user data directory (usually
``~/.gmt/server/earth/earth_edefl/`` and``~/.gmt/server/earth/earth_ndefl/`` the
first time you invoke this function. Afterwards, it will load the grid from the
data directory. So you'll need an internet connection the first time around.

These grids can also be accessed by passing in the file name
**@**\ *earth_defl_type*\_\ *res*\[_\ *reg*] to any grid processing function or
plotting method. *earth_defl_type* is the GMT name for the dataset. The available
options are **earth_edefl** and **earth_ndefl**. *res* is the grid resolution (see
below), and *reg* is the grid registration type (**p** for pixel registration or
**g** for gridline registration).

The default color palette table (CPTs) for this dataset is *@earth_defl.cpt*. It's
implicitly used when passing in the file name of the dataset to any grid plotting
method if no CPT is explicitly specified. When the dataset is loaded and plotted as
an :class:`xarray.DataArray` object, the default CPT is ignored, and GMT's default
CPT (*turbo*) is used. To use the dataset-specific CPT, you need to explicitly set
``cmap="@earth_defl.cpt"``.

Refer to :gmt-datasets:`earth-edefl.html` and :gmt-datasets:`earth-ndefl.html` for
more details about available datasets, including version information and references.

Parameters
----------
resolution
The grid resolution. The suffix ``d`` and ``m`` stand for arc-degrees and
arc-minutes.
region
The subregion of the grid to load, in the form of a sequence [*xmin*, *xmax*,
*ymin*, *ymax*] or an ISO country code. Required for grids with resolutions
higher than 5 arc-minutes (i.e., ``"05m"``).
registration
Grid registration type. Either ``"pixel"`` for pixel registration or
``"gridline"`` for gridline registration. Default is ``None``, means
``"gridline"`` for all resolutions except ``"01m"`` which is ``"pixel"`` only.
direction
By default, the east-west deflection (``direction="edefl"``) is returned, set
``direction="ndefl"`` to return the south-north deflection.

Returns
-------
grid
The Earth east-west or south-north deflection grid. Coordinates are latitude
and longitude in degrees. Units are in micro-radians.

Note
----
The registration and coordinate system type of the returned
:class:`xarray.DataArray` grid can be accessed via the GMT accessors (i.e.,
``grid.gmt.registration`` and ``grid.gmt.gtype`` respectively). However, these
properties may be lost after specific grid operations (such as slicing) and will
need to be manually set before passing the grid to any PyGMT data processing or
plotting functions. Refer to :class:`pygmt.GMTDataArrayAccessor` for detailed
explanations and workarounds.

Examples
--------

>>> from pygmt.datasets import load_earth_deflection
>>> # load the default grid for east-west deflection (gridline-registered 1
>>> # arc-degree grid)
>>> grid = load_earth_deflection()
>>> # load the default grid for south-north deflection
>>> grid = load_earth_deflection(direction="ndefl")
>>> # load the 30 arc-minutes grid with "gridline" registration
>>> grid = load_earth_deflection(resolution="30m", registration="gridline")
>>> # load high-resolution (5 arc-minutes) grid for a specific region
>>> grid = load_earth_deflection(
... resolution="05m", region=[120, 160, 30, 60], registration="gridline"
... )
"""
prefix = "earth_ndefl" if direction == "ndefl" else "earth_edefl"
grid = _load_remote_dataset(
name=prefix,
prefix=prefix,
resolution=resolution,
region=region,
registration=registration,
)
return grid
36 changes: 36 additions & 0 deletions pygmt/datasets/load_remote_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -110,6 +110,24 @@ class GMTRemoteDataset(NamedTuple):
"01m": Resolution("01m", registrations=["gridline"], tiled=True),
},
),
"earth_edefl": GMTRemoteDataset(
description="IGPP Earth east-west deflections",
units="micro-radians",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["pixel"], tiled=True),
},
),
"earth_faa": GMTRemoteDataset(
description="IGPP Earth free-air anomaly",
units="mGal",
Expand Down Expand Up @@ -277,6 +295,24 @@ class GMTRemoteDataset(NamedTuple):
"07m": Resolution("07m", registrations=["gridline"]),
},
),
"earth_ndefl": GMTRemoteDataset(
description="IGPP Earth south-north deflections",
units="micro-radians",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["pixel"], tiled=True),
},
),
"earth_vgg": GMTRemoteDataset(
description="IGPP Earth vertical gravity gradient",
units="Eotvos",
Expand Down
4 changes: 4 additions & 0 deletions pygmt/helpers/caching.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ def cache_data():
"@earth_age_01d_g",
"@earth_day_01d",
"@earth_dist_01d",
"@earth_edefl_01d",
"@earth_faa_01d_g",
"@earth_gebco_01d_g",
"@earth_gebcosi_01d_g",
Expand All @@ -26,6 +27,7 @@ def cache_data():
"@earth_mdt_01d_g",
"@earth_mdt_07m_g",
"@earth_mss_01d_g",
"@earth_ndefl_01d",
"@earth_night_01d",
"@earth_relief_01d_g",
"@earth_relief_01d_p",
Expand All @@ -50,11 +52,13 @@ def cache_data():
"@N30E060.earth_age_01m_g.nc",
"@N30E090.earth_age_01m_g.nc",
"@N00W030.earth_dist_01m_g.nc",
"@N00W030.earth_edefl_01m_p.nc",
"@N00W030.earth_faa_01m_p.nc",
"@N00W030.earth_geoid_01m_g.nc",
"@S30W060.earth_mag_02m_p.nc",
"@S30W120.earth_mag4km_02m_p.nc",
"@N30E090.earth_mss_01m_g.nc",
"@N30E090.earth_ndefl_01m_p.nc",
"@N00W090.earth_relief_03m_p.nc",
"@N00E135.earth_relief_30s_g.nc",
"@N00W010.earth_relief_15s_p.nc",
Expand Down
106 changes: 106 additions & 0 deletions pygmt/tests/test_datasets_earth_deflection.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,106 @@
"""
Test basic functionality for loading IGPP Earth east-west and south-north deflection
datasets.
"""

import numpy as np
import numpy.testing as npt
from pygmt.datasets import load_earth_deflection


def test_earth_edefl_01d():
"""
Test some properties of the Earth east-west deflection 01d data.
"""
data = load_earth_deflection(resolution="01d")
assert data.name == "z"
assert data.attrs["long_name"] == "edefl (microradians)"
assert data.attrs["description"] == "IGPP Earth east-west deflections"
assert data.attrs["units"] == "micro-radians"
assert data.attrs["horizontal_datum"] == "WGS84"
assert data.shape == (181, 361)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-90, 91, 1))
npt.assert_allclose(data.lon, np.arange(-180, 181, 1))
npt.assert_allclose(data.min(), -142.64, atol=0.04)
npt.assert_allclose(data.max(), 178.32, atol=0.04)


def test_earth_edefl_01d_with_region():
"""
Test loading low-resolution Earth east-west deflection with "region".
"""
data = load_earth_deflection(resolution="01d", region=[-10, 10, -5, 5])
assert data.shape == (11, 21)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-5, 6, 1))
npt.assert_allclose(data.lon, np.arange(-10, 11, 1))
npt.assert_allclose(data.min(), -28.92, atol=0.04)
npt.assert_allclose(data.max(), 24.72, atol=0.04)


def test_earth_edefl_01m_default_registration():
"""
Test that the grid returned by default for the 1 arc-minute resolution has a "pixel"
registration.
"""
data = load_earth_deflection(resolution="01m", region=[-10, -9, 3, 5])
assert data.shape == (120, 60)
assert data.gmt.registration == 1
npt.assert_allclose(data.coords["lat"].data.min(), 3.008333333)
npt.assert_allclose(data.coords["lat"].data.max(), 4.991666666)
npt.assert_allclose(data.coords["lon"].data.min(), -9.99166666)
npt.assert_allclose(data.coords["lon"].data.max(), -9.00833333)
npt.assert_allclose(data.min(), -62.24, atol=0.04)
npt.assert_allclose(data.max(), 15.52, atol=0.04)


def test_earth_ndefl_01d():
"""
Test some properties of the Earth south-north deflection 01d data.
"""
data = load_earth_deflection(resolution="01d", direction="ndefl")
assert data.name == "z"
assert data.attrs["long_name"] == "ndefl (microradians)"
assert data.attrs["description"] == "IGPP Earth south-north deflections"
assert data.attrs["units"] == "micro-radians"
assert data.attrs["horizontal_datum"] == "WGS84"
assert data.shape == (181, 361)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-90, 91, 1))
npt.assert_allclose(data.lon, np.arange(-180, 181, 1))
npt.assert_allclose(data.min(), -214.8, atol=0.04)
npt.assert_allclose(data.max(), 163.04, atol=0.04)


def test_earth_ndefl_01d_with_region():
"""
Test loading low-resolution Earth south-north deflection with "region".
"""
data = load_earth_deflection(
resolution="01d", region=[-10, 10, -5, 5], direction="ndefl"
)
assert data.shape == (11, 21)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-5, 6, 1))
npt.assert_allclose(data.lon, np.arange(-10, 11, 1))
npt.assert_allclose(data.min(), -48.08, atol=0.04)
npt.assert_allclose(data.max(), 18.92, atol=0.04)


def test_earth_ndefl_01m_default_registration():
"""
Test that the grid returned by default for the 1 arc-minute resolution has a "pixel"
registration.
"""
data = load_earth_deflection(
resolution="01m", region=[-10, -9, 3, 5], direction="ndefl"
)
assert data.shape == (120, 60)
assert data.gmt.registration == 1
npt.assert_allclose(data.coords["lat"].data.min(), 3.008333333)
npt.assert_allclose(data.coords["lat"].data.max(), 4.991666666)
npt.assert_allclose(data.coords["lon"].data.min(), -9.99166666)
npt.assert_allclose(data.coords["lon"].data.max(), -9.00833333)
npt.assert_allclose(data.min(), -107.04, atol=0.04)
npt.assert_allclose(data.max(), 20.28, atol=0.04)
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