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Migrate provision-with-micromamba to setup-micromamba #2536

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Merged
weiji14 merged 18 commits into from
May 12, 2023
Merged

Migrate provision-with-micromamba to setup-micromamba #2536

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35ae666
Migrate provision-with-micromamba to setup-micromamba
weiji14 May 11, 2023
1866c97
Rename cache-env to cache-environment
weiji14 May 11, 2023
565f9ad
Replace channels with condarc
weiji14 May 11, 2023
a6b19f7
Temporarily disable cache
weiji14 May 11, 2023
06445fd
Set environment-file to environment.yml
weiji14 May 11, 2023
c53ddec
Replace YAML linebreak | with >-
weiji14 May 11, 2023
3e2d136
Try removing environment-name parameter
weiji14 May 11, 2023
31b775f
Add extra space before optional contextily package
weiji14 May 11, 2023
38a0b17
Use environment-name instead of environment-file
weiji14 May 11, 2023
448494e
Revert "Add extra space before optional contextily package"
weiji14 May 11, 2023
9932847
Put optional-packages with space after python-version
weiji14 May 11, 2023
58c807c
More whitespace tweaks
weiji14 May 11, 2023
b5cc1c7
Try formatting as a single line with a leading space
weiji14 May 11, 2023
0e0c866
Revert "Temporarily disable cache"
weiji14 May 11, 2023
06c89e4
Bump mamba-org/setup-micromamba from 1.2.1 to 1.3.0
weiji14 May 12, 2023
9808f18
List installed packages from micromamba
weiji14 May 12, 2023
ea3afa9
Use micromamba list, not mamba list
weiji14 May 12, 2023
2ca451f
Bump to mamba-org/setup-micromamba 1.4.0 and remove micromamba list
weiji14 May 12, 2023
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11 changes: 7 additions & 4 deletions .github/workflows/cache_data.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -33,13 +33,16 @@ jobs:
# fetch all history so that setuptools-scm works
fetch-depth: 0

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
extra-specs: |
condarc: |
channels:
- conda-forge
- nodefaults
create-args: >-
python=3.11
gmt=6.4.0
numpy
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13 changes: 8 additions & 5 deletions .github/workflows/ci_docs.yml
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Expand Up @@ -65,15 +65,18 @@ jobs:
# fetch all history so that setuptools-scm works
fetch-depth: 0

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
condarc: |
channels:
- conda-forge
- nodefaults
cache-downloads: true
cache-env: true
extra-specs: |
cache-environment: true
create-args: >-
python=3.11
gmt=6.4.0
numpy
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11 changes: 7 additions & 4 deletions .github/workflows/ci_doctests.yaml
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Expand Up @@ -40,13 +40,16 @@ jobs:
# fetch all history so that setuptools-scm works
fetch-depth: 0

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
extra-specs: |
condarc: |
channels:
- conda-forge
- nodefaults
create-args: >-
python=3.11
gmt=6.4.0
numpy
Expand Down
23 changes: 10 additions & 13 deletions .github/workflows/ci_tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -67,12 +67,7 @@ jobs:
optional-packages: ''
- python-version: '3.11'
numpy-version: '1.24'
optional-packages: |
contextily
geopandas
ipython
rioxarray
sphinx-gallery
optional-packages: ' contextily geopandas ipython rioxarray sphinx-gallery'

timeout-minutes: 30
defaults:
Expand All @@ -99,23 +94,25 @@ jobs:
# fetch all history so that setuptools-scm works
fetch-depth: 0

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
condarc: |
channels:
- conda-forge
- nodefaults
cache-downloads: true
cache-env: true
extra-specs: |
python=${{ matrix.python-version }}
cache-environment: true
create-args: >-
python=${{ matrix.python-version }}${{ matrix.optional-packages }}
gmt=6.4.0
numpy=${{ matrix.numpy-version }}
pandas
xarray
netCDF4
packaging
${{ matrix.optional-packages }}
build
dvc
make
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13 changes: 8 additions & 5 deletions .github/workflows/ci_tests_dev.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -89,15 +89,18 @@ jobs:
comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
body: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
condarc: |
channels:
- conda-forge
- nodefaults
cache-downloads: true
cache-env: true
extra-specs: |
cache-environment: true
create-args: >-
python=3.11
cmake
make
Expand Down
13 changes: 8 additions & 5 deletions .github/workflows/ci_tests_legacy.yaml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -52,15 +52,18 @@ jobs:
# fetch all history so that setuptools-scm works
fetch-depth: 0

# Install Micromamba with conda-forge dependencies
- name: Setup Micromamba
uses: mamba-org/provision-with-micromamba@v15
uses: mamba-org/setup-micromamba@v1.4.0
with:
environment-name: pygmt
environment-file: false
channels: conda-forge,nodefaults
condarc: |
channels:
- conda-forge
- nodefaults
cache-downloads: true
cache-env: true
extra-specs: |
cache-environment: true
create-args: >-
python=3.9
gmt=${{ matrix.gmt_version }}
numpy
Expand Down