loading 3D .tiff files

[crypdick]

I have image stacks which I am trying to load into pytiff. However, it looks like it only loads the first slice:

    with pytiff.Tiff(input_fpath) as handle:
        img_array = handle
        print(img_array.shape)  # (15, 15) instead of (15,15,15)

[pglock]

if by 3D you mean multi page tiff files, you have to iterate over the pages:

with pytiff.Tiff(input_fpath) as handle:
  for page in handle.pages:
    stack.append(page[:])

Now stack is a list with length 15 and each element is a 15x15 numpy array.