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kraken2-build --download-library fungi fails with "Unknown module 'genomes'" and rsync protocol error

Status: Open.

#1013 In DerrickWood/kraken2;

· biostatshuo opened on Mar 5, 2026

fail to build kraken2 custom DB

Status: Open.

#1012 In DerrickWood/kraken2;

· woooh324 opened on Mar 5, 2026

Building standard db using k2 wrapper doesn't create taxonomy folder

Status: Open.

#1011 In DerrickWood/kraken2;

· almutwerner opened on Feb 23, 2026

k2 build standard issue

Status: Open.

#1010 In DerrickWood/kraken2;

· jervermex opened on Feb 3, 2026

Updated advice on converting Kraken output to Biom/Phyloseq

Status: Open.

#1009 In DerrickWood/kraken2;

· fgonzalez3 opened on Jan 30, 2026

Using the k2 classify across multiple databases

Status: Open.

#1008 In DerrickWood/kraken2;

· Alexa2279 opened on Jan 29, 2026

Add genome to prebuild database

Status: Open.

#1007 In DerrickWood/kraken2;

· termithorbor opened on Jan 29, 2026

IndexError: array index out of range

Status: Open.

#1006 In DerrickWood/kraken2;

· AbraamSa opened on Jan 28, 2026

Pracken index file link

Status: Open.

#1005 In DerrickWood/kraken2;

· mnter opened on Jan 26, 2026

custome kraken2 database with thousands of genomes

Status: Open.

#1003 In DerrickWood/kraken2;

· mars188 opened on Jan 15, 2026

Connection timed out

Status: Open.

#1002 In DerrickWood/kraken2;

· Omicslogic-git opened on Dec 19, 2025

IndexError: array index out of range with latest kraken2 version (2.17.1)

Status: Open.

#1001 In DerrickWood/kraken2;

· mars188 opened on Dec 11, 2025