fix(dot/network): fix memory allocations with `sizedBufferPool` by qdm12 · Pull Request #1963 · ChainSafe/gossamer

qdm12 · 2021-11-02T21:10:00Z

Changes

Use a slice instead of an array, since returning the array was effectively copying it

Tests

go test -benchmem -run=Benchmark_sizedBufferPool github.com/ChainSafe/gossamer/dot/network

Issues

Related to Profile memory usage and describe plan of action to address issues #1936 and found by reviewing PR dot/network: create blockResponseBuf pool #1913

Primary Reviewer

Anyone is welcome

danforbes · 2021-11-02T21:11:42Z

Is there any way to quantify the impact/improvement this has on the performance of the code?

qdm12 · 2021-11-02T21:21:22Z

Is there any way to quantify the impact/improvement this has on the performance of the code?

Not really, although it is now significantly better, see benchmark results. Since that piece was used for all dot networking, it could either had a very bad impact or it would had been barely noticeable. Only way to find out is to run it 😄 (I mean it, and check memory usage over time, profiling won't help really here I think)

danforbes · 2021-11-02T21:24:55Z

Benchmark results are super quantifiable...thanks, @qdm12 🙏🏻

qdm12 · 2021-11-02T21:27:42Z

@danforbes but let's not get too excited. Go's runtime is pretty efficient even with bad code, so there might not be any concrete difference sadly. Anyway, one can only hope 🌟 !

codecov · 2021-11-02T21:48:50Z

Codecov Report

Merging #1963 (ba211cf) into development (0bc4bf1) will increase coverage by 0.19%.
The diff coverage is 61.18%.

@@               Coverage Diff               @@
##           development    #1963      +/-   ##
===============================================
+ Coverage        59.94%   60.13%   +0.19%     
===============================================
  Files              185      193       +8     
  Lines            26343    26531     +188     
===============================================
+ Hits             15790    15954     +164     
- Misses            8677     8693      +16     
- Partials          1876     1884       +8

Flag	Coverage Δ
unit-tests	`60.13% <61.18%> (+0.19%)`	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
cmd/gossamer/profile.go	`0.00% <0.00%> (ø)`
cmd/gossamer/toml_config.go	`27.27% <0.00%> (ø)`
dot/config.go	`26.76% <0.00%> (-1.46%)`	⬇️
dot/network/message.go	`69.26% <0.00%> (-2.49%)`	⬇️
dot/network/sync.go	`5.26% <0.00%> (ø)`
dot/network/utils.go	`57.89% <0.00%> (ø)`
dot/rpc/subscription/listeners.go	`71.92% <0.00%> (ø)`
dot/state/block.go	`43.52% <0.00%> (-0.11%)`	⬇️
dot/state/bloom.go	`0.00% <0.00%> (ø)`
dot/state/offline_pruner.go	`0.00% <0.00%> (ø)`
... and 96 more

Continue to review full report at Codecov.

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noot · 2021-11-03T16:47:04Z

@qdm12 how does the CPU usage get affected by this (if any)? as the main point of the buffer pool was to prevent unnecessary malloc's which used a lot of CPU

qdm12 · 2021-11-03T16:59:29Z

@noot the previous implementation makes sense but was bugged. It would copy the array on every call to get() so effectively it was useless (the same as declaring a new array on every call). See the benchmark results commented below the benchmark.

I benchmarked using an array pointer and a slice (which has a pointer to the underlying data), and both gave similar results, so I decided to go with the slice for simplicity.

Side question, did we notice a performance bottleneck in this part? We should avoid such performance improvements without identifying a bottleneck and making sure there is a visible difference of performance (don't get me wrong, I love optimising 😄). That pool being bugged, it must had been slower than the original code, and we still used it; my point is we should be more careful about such optimisation changes in the future 👍

noot · 2021-11-03T17:24:55Z

@qdm12 sorry, did you bench the CPU or just memory? I guess more ops in the same amount of time = improved CPU performance? just want to be sure I'm reading it correctly. and yes, this was created because previously we were allocating a new buffer every time we received a network message, which was causing gossamer to use 100% CPU on every core basically immediately after starting. the CPU usage improved dramatically after adding this

qdm12 · 2021-11-03T17:50:24Z

did you bench the CPU or just memory

It does both.

I guess more ops in the same amount of time

Yes. You can see before it was using a lot more time (and memory) per operation (op).

the CPU usage improved dramatically after adding this ... which was causing gossamer to use 100% CPU on every core basically immediately after starting

That doesn't make sense, since the array was copied to another memory location on every get request. It might had been something else resolving the 100% cpu performance issue. I also doubt the GC (or malloc) would use 100% of even a single CPU core, even under high load. Also the network is magnitudes slower than memory bandwidth.
For science's sake 🥼, and once we have something easy to deploy changes, I would be curious to try reverting it and check CPU usage 😄

noot · 2021-11-03T19:57:56Z

@qdm12 I'm just going based off the profiling lol, it showed malloc using up all the CPU it could previously. I can try to find an old commit for you to try to profile if you'd like ;)

noot

[redacted] nevermind, let me test this more

dot/network/service.go

dot/network/pool_test.go

# [0.6.0](v0.5.0...v0.6.0) (2021-12-03) ### Bug Fixes * **babe:** Fix extrinsic format in block. ([#1530](#1530)) ([1a03b2a](1a03b2a)) * **ci:** add missing go-version matrix to fix development branch CI ([#2037](#2037)) ([6babe76](6babe76)) * **cmd/cfg:** Use Babe Lead value from toml config ([#2032](#2032)) ([06aa3e3](06aa3e3)) * cmd/gossamer: Generate random name if --name flag not set ([#1506](#1506)) ([3c05a88](3c05a88)) * confirm block import notifier is closed properly ([#1736](#1736)) ([ad2d85e](ad2d85e)) * **docs:** improve build-spec usage docs ([#1706](#1706)) ([2e164b4](2e164b4)) * **dot/core:** Add only extrinsic during chain reorg. ([#1609](#1609)) ([29413d4](29413d4)) * **dot/core:** Batch process transaction message. ([#1780](#1780)) ([0064836](0064836)) * **dot/core:** check transaction Validity.Propagate field to determine whether to propagate tx ([#1643](#1643)) ([81f23cc](81f23cc)) * **dot/core:** Fix handle transaction message test. ([#1607](#1607)) ([58b8725](58b8725)) * **dot/network, lib/grandpa:** fix handshake decoding and grandpa message handler sigabort ([#1631](#1631)) ([887f72c](887f72c)) * **dot/network, lib/grandpa:** fix node sync, improve devnet finality ([bcc7935](bcc7935)) * **dot/network:** add nil checks in connManager ([#2069](#2069)) ([7f9c042](7f9c042)) * **dot/network:** Check for size when decoding leb128. ([#1634](#1634)) ([d082b9e](d082b9e)) * **dot/network:** check if peer supports protocol ([#1617](#1617)) ([6bf66a4](6bf66a4)) * **dot/network:** decrease DHT find peers interval for gssmr nodes ([#1703](#1703)) ([08516a0](08516a0)) * **dot/network:** fix bugs in notifications protocol handlers; add metrics for inbound/outbound streams ([#2010](#2010)) ([8c2993d](8c2993d)) * **dot/network:** fix dht connection on discovery on devnet ([#2059](#2059)) ([da065b8](da065b8)) * **dot/network:** fix discovery between gossamer nodes ([#1594](#1594)) ([f4c79d3](f4c79d3)) * **dot/network:** fix justification request at head logic ([#1510](#1510)) ([98d1413](98d1413)) * **dot/network:** fix memory allocations with `sizedBufferPool` ([#1963](#1963)) ([e0b126b](e0b126b)) * **dot/network:** Fix missing digest in header ([#2092](#2092)) ([21ea85e](21ea85e)) * **dot/network:** Fix notification handshake and reuse stream. ([#1545](#1545)) ([a632dc4](a632dc4)) * **dot/network:** fix receiving notifications messages from substrate peers ([#1517](#1517)) ([fdf3c53](fdf3c53)) * **dot/network:** fix stream manager tests ([#1683](#1683)) ([e02eca4](e02eca4)) * **dot/network:** implement a handshake timeout ([#1615](#1615)) ([87c2f63](87c2f63)) * **dot/network:** Implement time based handle transaction ([#1942](#1942)) ([dd08424](dd08424)) * **dot/network:** move low reputation peer removal from network ConnManager to peer scoring logic (dot/peerstate) ([#2068](#2068)) ([ac16285](ac16285)), closes [#2039](#2039) * **dot/network:** Return on EOF error while reading stream. ([#1733](#1733)) ([f447eac](f447eac)) * **dot/network:** split stored streams and handshakeData into inbound and outbound ([#1553](#1553)) ([637050b](637050b)) * **dot/network:** update notificationsProtocol handshakeData to sync.Map ([#1492](#1492)) ([22f7269](22f7269)) * **dot/node:** Start websocket server only with `--ws` flag ([#1671](#1671)) ([6ecef3b](6ecef3b)) * **dot/state, lib/babe, lib/trie:** improve syncing between gossamer authority nodes ([#1613](#1613)) ([ca99fbf](ca99fbf)) * **dot/state, lib/grandpa:** update justification and SignedVote handling in database ([#1682](#1682)) ([bbdcd6f](bbdcd6f)) * **dot/state,dot/network:** improve memory usage when syncing ([#1491](#1491)) ([3b2ad8d](3b2ad8d)) * **dot/state:** add StorageState Lock/Unlock API for usage by babe and sync ([#1700](#1700)) ([3c22ace](3c22ace)) * **dot/state:** fix deadlock, fixes bootstrap syncing ([#1959](#1959)) ([dd80c09](dd80c09)) * **dot/state:** fix usage of trie.Snapshot ([#1489](#1489)) ([3880a40](3880a40)) * **dot/state:** track runtime per-block, fix runtime upgrades differing between forks ([#1638](#1638)) ([e133884](e133884)) * **dot/state:** update `*state.BlockState.AddBlockToBlockTree` to store block in `unfinalisedBlocksMap` ([#2006](#2006)) ([55d997f](55d997f)) * **dot/sync:** add nil header checks ([#2099](#2099)) ([a7d4be0](a7d4be0)) * **dot/sync:** fix block request and response logic ([#1907](#1907)) ([9c6283e](9c6283e)) * **dot/sync:** fix creating block response, fixes node sync between gossamer nodes ([#1572](#1572)) ([1328c80](1328c80)) * **dot/telemetry:** refactor telemetry to reduce CPU usage ([#1597](#1597)) ([bc31ac7](bc31ac7)) * **dot/types:** *types.Body to be of type []types.Extrinsic ([#1807](#1807)) ([4c09715](4c09715)) * **dot/types:** fix max value for digest ([#1687](#1687)) ([48405e7](48405e7)) * **dot:** fix `TestNewNode` ([#2070](#2070)) ([42908d0](42908d0)) * fix edit link ([#1507](#1507)) ([5089327](5089327)) * fix Kusama sync; add storageState lock in core.HandleTransactionMessage ([#1783](#1783)) ([1d688e4](1d688e4)) * **lib/babe, lib/runtime/wasmer:** fixes for v0.9.8+ runtime ([#2075](#2075)) ([2f9f80c](2f9f80c)) * **lib/babe:** add `--babe-lead` flag, update epoch handling logic ([#1895](#1895)) ([7abcce6](7abcce6)) * **lib/babe:** add pre-runtime digest before calling initialize_block ([#1581](#1581)) ([c1b26d3](c1b26d3)) * **lib/babe:** always use 2/3 of slot to produce block, re-add potentially valid txs to queue ([#1679](#1679)) ([cf93ad3](cf93ad3)) * **lib/babe:** call AddBlock in BABE synchronously ([#1585](#1585)) ([86acc43](86acc43)) * **lib/babe:** fix BABE state storing after building block ([#1536](#1536)) ([1a3dea2](1a3dea2)) * **lib/babe:** fix err log ([#1801](#1801)) ([a96f06a](a96f06a)) * **lib/babe:** fix setting first slot of network, fix loading BABE epoch params ([#1640](#1640)) ([5c3dbfe](5c3dbfe)) * **lib/babe:** fix timing for transition between epochs ([#1636](#1636)) ([57027db](57027db)) * **lib/blocktree:** fix blocktree bug ([#2060](#2060)) ([c17b53a](c17b53a)) * **lib/blocktree:** fix potential nil pointer dereference in `HighestCommonAncestor`, core `handleBlocksAsync` ([#1993](#1993)) ([f7f4463](f7f4463)) * **lib/blocktree:** fix setting leaves after blocktree pruning ([#1605](#1605)) ([58c0854](58c0854)) * **lib/blocktree:** removes the inconsistency to choose a deepest leaf ([#2094](#2094)) ([43d68e3](43d68e3)) * **lib/crypto/ed25519:** update ed25519 to use go-schnorrkel bip39 derivation ([#1488](#1488)) ([dfb95d2](dfb95d2)) * **lib/genesis:** Update missing and incorrect fields in genesis file. ([#1681](#1681)) ([8207704](8207704)) * **lib/grandpa:** fix grandpa stall and various bugs ([#1708](#1708)) ([67c93f4](67c93f4)) * **lib/grandpa:** fix grandpa vote message switch ([#2095](#2095)) ([461890c](461890c)) * **lib/grandpa:** fix threshold checking to be strictly greater than 2/3 ([#1891](#1891)) ([66ffe51](66ffe51)) * **lib/grandpa:** use `defaultGrandpaInterval` if not set, fixes error on startup ([#1982](#1982)) ([75627b5](75627b5)) * **lib/runtime/life:** remove import C from life ([#1923](#1923)) ([ed507d2](ed507d2)) * **lib/runtime:** update HOST_API_TEST_RUNTIME_URL to reference specific commit ([#1885](#1885)) ([666ed06](666ed06)) * **log-levels:** do not ignore configuration file log levels ([#2016](#2016)) ([80879b2](80879b2)) * pending bubble hidden after block included ([#1592](#1592)) ([5826322](5826322)) * persist node name ([#1543](#1543)) ([88b88f2](88b88f2)) * **pprof:** only run pprof service if enabled ([#2073](#2073)) ([55669c5](55669c5)) * **release:** Trigger release when pushed to main branch. ([#1566](#1566)) ([d445c97](d445c97)) * **rpc/subscription:** subscribe runtime version notify when version changes ([#1686](#1686)) ([9a76d39](9a76d39)) * Staging CI workflow ([#2034](#2034)) ([84ec792](84ec792)) * **trie:** memory leak fix in `lib/trie` ([#2009](#2009)) ([0ad5eb7](0ad5eb7)) * update deprecated package ([#1603](#1603)) ([f195204](f195204)) * update go-schnorrkel version ([#1557](#1557)) ([b86c7ff](b86c7ff)) * update gssmr genesis to use pallet_babe::SameAuthoritiesForever ([#1696](#1696)) ([fb0a751](fb0a751)) * update HOST_API_TEST_RUNTIME_URL ([#1898](#1898)) ([2ef59a8](2ef59a8)) * **utils:** create a specific folder for database ([#1598](#1598)) ([8c67795](8c67795)) ### Features * add --chain dev option ([#1561](#1561)) ([04a2969](04a2969)) * Add properties and chainId on build-spec command ([#1520](#1520)) ([b18290c](b18290c)) * cmd: implement import-runtime subcommand ([#1483](#1483)) ([d82b2da](d82b2da)) * **cmd/gossamer:** implement --telemetry-url parameter ([#1890](#1890)) ([b202e89](b202e89)), closes [#1502](#1502) * **cmd:** implement offline pruning of state trie ([#1564](#1564)) ([af9c925](af9c925)) * **devnet:** Local Gossamer Devnet ([#2008](#2008)) ([a520001](a520001)) * **dot/network, lib/grandpa:** request justification on receiving NeighbourMessage, verify justification on receipt ([#1529](#1529)) ([e1f9f42](e1f9f42)) * **dot/network:** Add cache for network message. ([#1511](#1511)) ([accaf69](accaf69)) * **dot/network:** add propagate return bool to messageHandler func type to determine whether to propagate message or not ([#1555](#1555)) ([0d6f488](0d6f488)) * **dot/network:** implement persistent peers functionality ([#1512](#1512)) ([7850532](7850532)) * **dot/network:** implement streamManager to cleanup not recently used streams ([#1611](#1611)) ([ba861bf](ba861bf)) * **dot/network:** request block justifications when near head ([#1499](#1499)) ([ae7012b](ae7012b)) * **dot/peerset:** Implement peer scoring ([#1791](#1791)) ([1c989ad](1c989ad)) * **dot/rpc/modules:** add `system_addReservedPeer` and `system_removeReservedPeer` RPC call ([#1712](#1712)) ([dba5922](dba5922)) * **dot/rpc:** Add `system_localListenAddresses` RPC call ([#1689](#1689)) ([c981d2e](c981d2e)) * **dot/rpc:** Implement `childstate_getKeys` rpc call ([#1800](#1800)) ([9b2f41e](9b2f41e)) * **dot/rpc:** implement sync_state_genSyncSpec RPC call ([#1827](#1827)) ([2186caf](2186caf)) * **dot/state:** implement online pruning of historical state tries ([#1596](#1596)) ([3eb9399](3eb9399)) * **dot/sync:** implement codeSubstitutes ([#1635](#1635)) ([d87aaeb](d87aaeb)) * dot/telemetry: Implement basic telemetry connection ([#1497](#1497)) ([fcb4159](fcb4159)) * **dot/telemetry:** Added connection retry ([#1904](#1904)) ([579a791](579a791)) * **dot/telemetry:** Added more telemetry messages in grandpa client ([#2043](#2043)) ([2e57d15](2e57d15)), closes [#1841](#1841) [#1842](#1842) * **dot/telemetry:** implement notify.finalized telemetry interface ([#1877](#1877)) ([de1a60d](de1a60d)) * **dot/telemetry:** implement substrate_number_leaves metrics ([#1926](#1926)) ([69823c0](69823c0)) * **dot/telemetry:** implement telemetry message network_state ([#1618](#1618)) ([a81844e](a81844e)) * **flags:** read log levels from flags ([#1953](#1953)) ([9694e46](9694e46)) * implement ext_default_child_storage_storage_kill_version_2 ([#1799](#1799)) ([c2908ae](c2908ae)) * implement ext_offchain_index_set_version_1 for wasmer runtime ([#1739](#1739)) ([96c30a6](96c30a6)) * **lib/babe:** add check of types.ConfigData.SecondarySlots for disabling secondary verification ([#1910](#1910)) ([cd27ae4](cd27ae4)) * **lib/grandpa:** fully verify justifications using GrandpaState ([#1544](#1544)) ([028d25e](028d25e)) * **lib/grandpa:** Include equivocatory nodes while creating justification ([#1911](#1911)) ([aca86b6](aca86b6)) * **lib/grandpa:** send NeighbourMessage to peers ([#1558](#1558)) ([322ccf9](322ccf9)) * **lib/runtime/wasmer:** implement ext_default_child_storage_storage_kill_version_3 ([#1878](#1878)) ([a719a60](a719a60)) * **lib/runtime/wasmer:** implement ext_offchain_local_storage_version_1 ([#1821](#1821)) ([0f63b17](0f63b17)) * **lib/runtime:** Implement `ext_offchain_http_request_add_header_version_1` host function ([#1994](#1994)) ([0a30b3d](0a30b3d)) * **lib/runtime:** Implement `ext_offchain_http_request_start_version_1` host function ([#1947](#1947)) ([974b1fc](974b1fc)) * **lib/runtime:** Implement `trie_blake2_256_verify_proof` host function ([#1920](#1920)) ([506565d](506565d)) * **lib/trie:** Implement `verify_proof` function ([#1883](#1883)) ([67bb5ef](67bb5ef)) * **lib/trie:** Implement limit for trie.ClearPrefix ([#1905](#1905)) ([becec9e](becec9e)) * **lib/trie:** Parallel hash trie. ([#1657](#1657)) ([22827e7](22827e7)) * **pprof:** Pprof HTTP server service ([#1991](#1991)) ([ce24ea9](ce24ea9)) * **rpc/subscription:** implement state_unsubscribeStorage ([#1574](#1574)) ([7574f10](7574f10)) * **rpc:** Implement `childstate_getChildStorage` RPC call ([#1832](#1832)) ([3d949f2](3d949f2)) * **rpc:** Implement `childstate_getStorageHash` RPC call ([#1805](#1805)) ([e539bd3](e539bd3)) * **rpc:** Implement `childstate_getStorageSize` RPC call ([#1810](#1810)) ([a04deb6](a04deb6)) * **rpc:** Implement `payment_queryInfo` RPC call ([#1826](#1826)) ([7a5deec](7a5deec)) * **rpc:** Implement `state_getReadProof` rpc call ([#1768](#1768)) ([865f80f](865f80f)) * **runtime:** implement custom logging handler that print function name ([#1825](#1825)) ([2b1276d](2b1276d)) * **telemetry:** send telemetry messages when GRANDPA receieves commit or vote messages ([#2015](#2015)) ([7bf40e1](7bf40e1)), closes [#1840](#1840) [#1839](#1839) [#1838](#1838) * **telemetry:** send txpool.import telemetry msg ([#1966](#1966)) ([ffc81bf](ffc81bf)) ### Reverts * Revert "feat(dot/rpc) implement `author_hasSessionKeys` RPC call (#1704)" (#1714) ([65380fd](65380fd)), closes [#1704](#1704) [#1714](#1714)

github-actions · 2021-12-03T21:05:05Z

🎉 This PR is included in version 0.6.0 🎉

The release is available on GitHub release

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qdm12 requested review from EclesioMeloJunior, arijitAD, edwardmack, jimjbrettj, kishansagathiya, noot, omar391 and timwu20 as code owners November 2, 2021 21:10

qdm12 mentioned this pull request Nov 2, 2021

Profile memory usage and describe plan of action to address issues #1936

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Investigate codebase for memory problems #1973

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qdm12 force-pushed the qdm12-mem-sizedbufferpool branch from eb58a56 to 3bffcf5 Compare November 9, 2021 10:25

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fix(dot/network): fix bugs in notifications protocol handlers; add metrics for inbound/outbound streams #2010

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qdm12 added 2 commits November 12, 2021 16:48

Fix bad allocations with benchmark

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Tabs to spaces 😎

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qdm12 added 3 commits November 12, 2021 16:48

Add unit test

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Add race test

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Fix pool settings for testing and production

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qdm12 force-pushed the qdm12-mem-sizedbufferpool branch from 3bffcf5 to ba211cf Compare November 12, 2021 16:48

qdm12 merged commit e0b126b into development Nov 15, 2021

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timwu20 pushed a commit to timwu20/gossamer that referenced this pull request Dec 6, 2021

fix(dot/network): fix memory allocations with sizedBufferPool (Chai…

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