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MMathisLab merged 6 commits into from
May 3, 2024
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test directory and very small data cube #75

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test directory and very small data cube
MMathisLab May 3, 2024
de1f0a1
Update README.md
MMathisLab May 3, 2024
49dd1b2
Update README.md
MMathisLab May 3, 2024
e989ba6
Rename folder and edit README
C-Achard May 3, 2024
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Merge branch 'main' into mwm/test
C-Achard May 3, 2024
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Rename to "examples"
C-Achard May 3, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -126,6 +126,7 @@ wandb/
!napari_cellseg3d/_tests/res/wnet_test/*.tif
!napari_cellseg3d/_tests/res/wnet_test/lab/*.tif
!napari_cellseg3d/_tests/res/wnet_test/vol/*.tif
!example_volumes/*

#include docs images
!docs/source/logo/*
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7 changes: 7 additions & 0 deletions example_volumes/README.md
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# Testing CellSeg3D on demo data

Here is a very small volume (from [IDR project 853](https://idr.openmicroscopy.org/webclient/?show=project-853)) to test on.
You can install, launch `napari`, activate the CellSeg3D plugin app, and drag & drop this volume into the canvas.
Then, for example, run `inference` with one of our models.

See [CellSeg3D documentation](https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html) for more details.
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