Update macbook conda

README.md

@@ -59,15 +59,15 @@ Previous additions :
 
 
 
-### Install note for M1/M2 Mac users
+### Install note for ARM64 (Silicon) Mac users
 
 To avoid issues when installing on the ARM64 architecture, please follow these steps.
 
-1) Create a new conda env using the provided conda/napari_cellseg3d_m1.yml file :
+1) Create a new conda env using the provided conda/napari_cellseg3d_ARM64.yml file :
 
         git clone https://github.com/AdaptiveMotorControlLab/CellSeg3d.git
         cd CellSeg3d
-        conda env create -f conda/napari_cellseg3d_m1.yml
+        conda env create -f conda/napari_cellseg3d_ARM64.yml
         conda activate napari_cellseg3d_m1
 
 2) Install the plugin.

conda/napari_cellseg3d_m1.yml → conda/napari_cellseg3d_ARM64.yml

@@ -1,4 +1,4 @@
-name: napari_cellseg3d_m1
+name: napari_cellseg3d_ARM64
 channels:
   - anaconda
   - conda-forge
@@ -11,18 +11,14 @@ dependencies:
     - pip:
         - numpy
         - napari>=0.4.14
-        # - opencv-python>=4.5.5
         - scikit-image>=0.19.2
         - matplotlib>=3.4.1
         - tifffile>=2022.2.9
-        # - imageio-ffmpeg>=0.4.5
         - torch>=1.11
         - monai[nibabel, einops]>=0.9.0
         - tqdm
-        # - nibabel
         - scikit-image
-        # - pillow
         - pyclesperanto-prototype
         - tqdm
         - matplotlib
-        # - vispy>=0.9.6
+        - napari_cellseg3d

docs/source/guides/installation_guide.rst

@@ -2,8 +2,8 @@ Installation guide ⚙
 ======================
 This guide outlines the steps for installing CellSeg3D and its dependencies. The plugin is compatible with Windows, Linux, and MacOS.
 
-**Note for M1/M2 (ARM64) Mac Users:**
-Please refer to the :ref:`section below <source/guides/installation_guide:M1/M2 (ARM64) Mac installation>` for specific instructions.
+**Note for ARM64 Mac Users:**
+Please refer to the :ref:`section below <source/guides/installation_guide:ARM64 Mac installation>` for specific instructions.
 
 .. warning::
     If you encounter any issues during installation, feel free to open an issue on our `GitHub repository`_.
@@ -46,7 +46,7 @@ Installing CellSeg3D
 --------------------------------------------
 
 .. warning::
-    For M1 Mac users, please see the :ref:`section below <source/guides/installation_guide:M1/M2 (ARM64) Mac installation>`
+    For ARM64 Mac users, please see the :ref:`section below <source/guides/installation_guide:ARM64 Mac installation>`
 
 **Via pip**:
 
@@ -69,11 +69,11 @@ Navigate to the cloned CellSeg3D folder and run:
 Successful installation will add the napari-cellseg3D plugin to napari’s Plugins section.
 
 
-M1/M2 (ARM64) Mac installation
+ARM64 Mac installation
 --------------------------------------------
 .. _ARM64_Mac_installation:
 
-For ARM64 Macs, we recommend using our custom CONDA environment. This is particularly important for M1 or M2 MacBooks.
+For ARM64 Macs, we recommend using our custom CONDA environment. This is particularly important for ARM64 (Silicon chips) MacBooks.
 
 Start by installing `miniconda3`_.
 
@@ -91,7 +91,7 @@ In the terminal, navigate to the CellSeg3D folder:
 .. code-block::
 
     cd CellSeg3D
-    conda env create -f conda/napari_cellseg3d_m1.yml
+    conda env create -f conda/napari_cellseg3d_ARM64.yml
 
 3. **Activate the environment** :
 

docs/welcome.rst

@@ -58,7 +58,7 @@ For detailed installation instructions, including installing pre-requisites,
 please see :ref:`source/guides/installation_guide:Installation guide ⚙`
 
 .. warning::
-    **M1/M2 MacOS users**, please refer to the :ref:`dedicated section <source/guides/installation_guide:M1/M2 (ARM64) Mac installation>`
+    **ARM64 MacOS users**, please refer to the :ref:`dedicated section <source/guides/installation_guide:ARM64 Mac installation>`
 
 You can install ``napari-cellseg3d`` via pip: