UI API overhaul + several features/fixes

.gitignore

@@ -10,6 +10,7 @@ __pycache__/
 *.tif
 napari_cellseg3d/_tests/res/*.csv
 *.pth
+*.db
 
 # Distribution / packaging
 .Python
@@ -97,3 +98,4 @@ venv/
 /napari_cellseg3d/models/saved_weights/
 /docs/res/logo/old_logo/
 /reqs/
+

README.md

@@ -23,6 +23,11 @@ A napari plugin for 3D cell segmentation: training, inference, and data review.
 
 ## Installation
 
+Note : we recommend using conda to create a new environment for the plugin.
+
+    conda create --name python=3.8 napari-cellseg3d
+    conda activate napari-cellseg3d
+
 You can install `napari-cellseg3d` via [pip]:  
 
     pip install napari-cellseg3d

napari_cellseg3d/_tests/test_review.py

@@ -5,23 +5,21 @@
 
 def test_launch_review(make_napari_viewer):
 
-        view = make_napari_viewer()
-        widget = rev.Reviewer(view)
+    view = make_napari_viewer()
+    widget = rev.Reviewer(view)
 
-        # widget.filetype_choice.setCurrentIndex(0)
+    # widget.filetype_choice.setCurrentIndex(0)
 
-        im_path = os.path.dirname(os.path.realpath(__file__)) + "/res/test.tif"
+    im_path = os.path.dirname(os.path.realpath(__file__)) + "/res/test.tif"
 
-        widget.image_path = im_path
-        widget.label_path = im_path
-
-        print(widget.image_path)
-        print(widget.label_path)
-        print(widget.as_folder)
-        print(widget.filetype)
-        widget.run_review()
-        widget._viewer.close()
-
-        assert widget._viewer is not None
+    widget.image_path = im_path
+    widget.label_path = im_path
 
+    print(widget.image_path)
+    print(widget.label_path)
+    print(widget.as_folder)
+    print(widget.filetype)
+    widget.run_review()
+    widget._viewer.close()
 
+    assert widget._viewer is not None