nanocompore/pyproject.toml at master · tleonardi/nanocompore · GitHub

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[project]
authors = [
    {name = "Mihail Zdravkov", email = "[email protected]"},
    {name = "Logan Mulroney", email = "[email protected]"},
    {name = "Tommaso Leonardi", email = "[email protected]"},
    {name = "Adrien Leger", email = "[email protected]"},
]
license = {text = "GPL-3.0"}
requires-python = "<4.0,>=3.10"
dependencies = [
    "numpy<2.0",
    "scipy<2.0,>=1.15",
    "tqdm<5,>=4",
    "pyfaidx<1.0,>=0.8",
    "matplotlib<4.0,>=3.10",
    "seaborn<1.0,>=0.13",
    "pandas<3.0,>=2.2",
    "statsmodels<1.0,>=0.14",
    "scikit-learn<2.0,>=1.4",
    "pyyaml<5.4,>=5",
    "loguru<1.0,>=0.5",
    "pod5<1.0.0,>=0.3.6",
    "pysam<1.0.0,>=0.22.0",
    "ont-remora==3.3",
    "schema<1.0.0,>=0.7.5",
    "pynvml<13.0.0,>=12.0.0",
    "jaxtyping>=0.2.38",
    "gtfparse>=2.5.0",
    "gmm-gpu==0.2.8",
]
name = "nanocompore"
version = "2.2.0"
description = "Software package that identifies raw signal changes between two conditions from dRNA-Seq data."
readme = "README.md"
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Programming Language :: Python :: 3",
]

[project.urls]
repository = "https://github.com/tleonardi/nanocompore"
documentation = "http://nanocompore.rna.rocks"

[project.scripts]
nanocompore = "nanocompore.__main__:main"

[dependency-groups]
dev = [
    "pytest<9,>=8",
    "nbconvert<8,>=7",
    "mkdocs>=1.6",
    "pymdown-extensions>=10",
    "mknotebooks<1,>=0",
    "mkdocs-material>=9.6",
    "markdown>=3.8",
    "mkdocstrings[python]>=0.18",
    "pytest-cov>=6.1.1",
    "pytest-xdist>=3.6.1",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.sdist]
include = [
  "nanocompore/**",
  "/tests",
]