collect rule

Author: benjamin-lieser

benchmark_test/Snakefile

@@ -89,8 +89,9 @@ rule benchmark_phylograd:
 
 
 rule collect_iqtree_benchmark:
-    input: iqtree = expand("data/sim/alignment_{num_leafs}_{L}.fasta.iqtree.time", num_leafs=[2**n for n in [4,6,8,10,12]], L=[100,500]),
-           phylograd = expand("data/sim/alignment_{num_leafs}_{L}.fasta.phylograd.time", num_leafs=[2**n for n in [4,6,8,10,12]], L=[100,500])
+    input: iqtree = expand("data/sim/alignment_{num_leafs}_{L}_{T}.iqtree.log", num_leafs=[2**n for n in [4,6,8,10,12]], L=[50,200], T=[1,32]),
+           phylograd = expand("data/sim/alignment_{num_leafs}_{L}_{T}.phylograd.log", num_leafs=[2**n for n in [4,6,8,10,12]], L=[50,200], T=[1,32]),
+           raxml = expand("data/sim/alignment_{num_leafs}_{L}_{T}.raxml.log", num_leafs=[2**n for n in [4,6,8,10,12]], L=[50,200], T=[1,32])
     output: "data/iqtree_benchmark.txt"
     shell: "tail -n +1 {input.iqtree} {input.phylograd} > {output}"