Merge pull request #1 from AllenNeuralDynamics/main

chore: intitial repo setup

Author: seanmcculloch

.codeocean/environment.json

@@ -0,0 +1,10 @@
+{
+	"version": 1,
+	"base_image": "codeocean/code-server-python-extensions-pack:code-server4.108.2python3.12.4aind-metadata-mcp0.5.2withDOTFILES_REPOsupport",
+	"post_install": true,
+	"options": {
+		"registry_host_arg": true,
+		"git_ask_pass": true,
+		"mount_secrets": true
+	}
+}

.codeocean/resources.json

@@ -0,0 +1,4 @@
+{
+	"version": 1,
+	"resource_class": "xsmall"
+}

.gitignore

@@ -150,4 +150,5 @@ dmypy.json
 !.vscode/tasks.json
 !.vscode/launch.json
 !.vscode/extensions.json
-!.vscode/*.code-snippets
+!.vscode/*.code-snippets
+.vscode

code/run_capsule.py

@@ -2,6 +2,6 @@
 
 def run():
     """ basic run function """
-    pass
+    print("run_capsule.run()")
 
 if __name__ == "__main__": run()

environment/Dockerfile

@@ -1,9 +1,11 @@
-# hash:sha256:6ceefde681fb5ad2ca41bca5b1ebdfc35ce9ce0f7acc50dc183706cc463f5d61
+# hash:sha256:612cb4028985b1571839958aef978a5cf931ef4b95b17393c84c131403e37943
 ARG REGISTRY_HOST
-FROM $REGISTRY_HOST/codeocean/jupyterlab:3.6.1-miniconda4.12.0-python3.9-ubuntu20.04
+FROM $REGISTRY_HOST/codeocean/code-server-python-extensions-pack:code-server4.108.2python3.12.4aind-metadata-mcp0.5.2withDOTFILES_REPOsupport
 
 ARG DEBIAN_FRONTEND=noninteractive
-
 ARG GIT_ASKPASS
-ARG GIT_ACCESS_TOKEN
 COPY git-askpass /
+
+COPY postInstall /
+RUN --mount=type=secret,id=secrets . /run/secrets/secrets \
+    && /postInstall

environment/postInstall

@@ -0,0 +1,10 @@
+#!/usr/bin/env bash
+set -e
+
+#!/usr/bin/env bash
+set -e
+
+git clone --branch sean-dev --single-branch https://github.com/seanmcculloch/photon-mosaic.git
+cd photon-mosaic
+git checkout 6af660c
+pip install .