Repositories list

• sgn

  Public
  The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites

  perl

  perl

  PLpgSQL

  •

  MIT License

  •41•74•579•6•Updated Mar 9, 2026Mar 9, 2026

• breedbase_dockerfile

  Public
  The Dockerfiles for breeDBase

  Dockerfile

  •

  MIT License

  •10•12•0•0•Updated Mar 6, 2026Mar 6, 2026

• inventory.breedbase.org

  Public
  a breedbase instance for a crop agnostic inventory management system for BI OnRamp

  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Mar 5, 2026Mar 5, 2026

• cxgn-corelibs

  Public
  Various Modules relating to SGN and Breedbase

  perl

  perl

  Perl

  •14•11•3•2•Updated Mar 4, 2026Mar 4, 2026

• bio-chado-schema

  Public
  A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.

  Perl

  •9•3•0•0•Updated Feb 27, 2026Feb 27, 2026

• perl-local-lib

  Public
  Git repository for Perl local-lib for faster installs (eg. Dockerfiles)

  Perl

  •1•0•0•1•Updated Feb 24, 2026Feb 24, 2026

• cassbase

  Public
  The mason components for the cassbase database, a variation of cassavabase for the CASS project

  Perl

  •

  MIT License

  •0•0•1•1•Updated Feb 23, 2026Feb 23, 2026

• erysimum

  Public
  Website for Erysimum genomes

  MIT License

  •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• milkweed

  Public
  0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• sugarcane-industry

  Public
  PLpgSQL

  •

  MIT License

  •1•0•0•1•Updated Feb 2, 2026Feb 2, 2026

• solgenomics

  Public
  The mason components needed to run the solgenomics.net website

  MIT License

  •0•1•1•0•Updated Feb 2, 2026Feb 2, 2026

• gbsappui

  Public
  A user interface for GBSapp that can be integrated into Breedbase

  Perl

  •

  MIT License

  •0•0•17•0•Updated Dec 22, 2025Dec 22, 2025

• fernbase

  Public
  MIT License

  •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

• nicotianabase

  Public
  Nicotiana base

  MIT License

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• musabase

  Public
  0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

• Tea

  Public
  code and database for the expression query, mining, analysis, and visualization tools

  HTML

  •

  MIT License

  •5•8•20•0•Updated Nov 12, 2025Nov 12, 2025

• crispget

  Public template
  HTML

  •

  MIT License

  •0•0•1•0•Updated Oct 21, 2025Oct 21, 2025

• VIGS

  Public
  Stand Alone version of SGN VIGS Tool

  HTML

  •

  MIT License

  •3•4•0•0•Updated Oct 16, 2025Oct 16, 2025

• cannabase

  Public
  C. sativa base

  MIT License

  •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

• yambase

  Public
  web interface for Yambase database

  0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

• sweetpotatobase

  Public
  Web interface for SweetPotatoBase website

  0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

• okra.breedbase.org

  Public
  PLpgSQL

  •

  MIT License

  •1•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• cea

  Public
  Cassava Expression Atlas

  1•0•1•0•Updated Sep 19, 2025Sep 19, 2025

• cotton

  Public
  PLpgSQL

  •

  MIT License

  •0•1•0•0•Updated Sep 17, 2025Sep 17, 2025

• courtney.breedbase.org

  Public
  a breedbase instance for Lance of Giovannoni lab

  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• taro.breedbase.org

  Public
  A breedbase site for taro

  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• resistapple.breedbase.org

  Public
  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• inventory-test.breedbase.org

  Public
  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• brri-drought.breedbase.org

  Public
  PLpgSQL

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• apollo.breedbase.org

  Public
  docker based apollo instance

  0•0•0•0•Updated Sep 10, 2025Sep 10, 2025