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    87 repositories

    • ethology

      Public
      Mix-and-match computer vision tools for your animal behaviour analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•29•32•29•Updated Aug 1, 2026Aug 1, 2026

    • movement

      Public
      A Python toolbox for analysing animal body movements across space and time
      behaviorkinematicsneuroscience
      behaviorkinematicsneurosciencebehaviouranimalmotion-trackingethology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •140•288•134•55•Updated Aug 1, 2026Aug 1, 2026

    • course-animals-in-motion

      Public
      A handbook about open-source tools for tracking animals in videos and quantifying behaviour.
      pythonbehaviortracking
      pythonbehaviortrackingmotionhandbookanimalsmovementquarto
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•6•8•1•Updated Jul 31, 2026Jul 31, 2026

    • course-ephys-osss

      Public
      A repository to plan the extracellular electrophysiology course for OSSS 2026
      TeX
      •
      Creative Commons Attribution 4.0 International
      •2•1•6•6•Updated Jul 31, 2026Jul 31, 2026

    • OSCaR

      Public
      A python package for breeding scheme calculations.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•27•4•Updated Jul 31, 2026Jul 31, 2026

    • OSCaR-web-app

      Public
      A web application for breeding scheme calculations
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•14•7•Updated Jul 31, 2026Jul 31, 2026

    • dashboard

      Public
      Overview of all Neuroinformatics Unit repos
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•4•5•1•Updated Jul 31, 2026Jul 31, 2026

    • poseinterface

      Public
      Run pose estimation across frameworks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•8•13•1•Updated Jul 30, 2026Jul 30, 2026

    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      •5•14•8•0•Updated Jul 29, 2026Jul 29, 2026

    • osss-python-prep

      Public
      TypeScript
      •1•2•1•0•Updated Jul 28, 2026Jul 28, 2026

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•39•14•3•Updated Jul 28, 2026Jul 28, 2026

    • spikewrap

      Public
      A package to manage electrophysiology analysis.
      electrophysiologyneuropixelsextracellular-electrophysiology
      electrophysiologyneuropixelsextracellular-electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•23•23•5•Updated Jul 27, 2026Jul 27, 2026

    • slides-osss-intro

      Public
      Shared introductory slides to use at the start of each day at OSW
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•3•0•Updated Jul 27, 2026Jul 27, 2026

    • datashuttle

      Public
      Tool for the creation, validation and transfer of neuroscience project folders.
      neurosciencedata-managementneuroblueprint
      neurosciencedata-managementneuroblueprint
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•36•44•4•Updated Jul 22, 2026Jul 22, 2026

    • osss26-collaboration-day

      Public
      A place to create and discuss ideas for the 2025 Open Software Week hackathon
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•1•Updated Jul 22, 2026Jul 22, 2026

    • neuroinformatics-unit.github.io

      Public
      Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      •8•14•28•2•Updated Jul 20, 2026Jul 20, 2026

    • slides-large-array-data-osss-2026

      Public
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • movement-figures

      Public
      Reproducible figures for research outputs related to movement.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•2•0•Updated Jul 15, 2026Jul 15, 2026

    • HowTo

      Public archive
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      •1•10•0•0•Updated Jul 14, 2026Jul 14, 2026

    • NeuroBlueprint

      Public
      Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      •5•23•18•1•Updated Jul 14, 2026Jul 14, 2026

    • scripts

      Public
      Small but useful scripts to share
      Python
      •1•7•0•2•Updated Jul 7, 2026Jul 7, 2026

    • qt-niu

      Public
      Reusable Qt elements
      Python
      •
      MIT License
      •0•6•1•0•Updated Jul 6, 2026Jul 6, 2026

    • fancylog

      Public
      Fancier logging with python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•16•11•1•Updated Jul 6, 2026Jul 6, 2026

    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      •
      MIT License
      •1•8•0•0•Updated Jul 6, 2026Jul 6, 2026

    • swc-slack

      Public
      Tools to interface with slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•1•0•Updated Jul 6, 2026Jul 6, 2026

    • driftplots

      Public
      Viewing Kilosort drift maps
      Python
      •
      MIT License
      •0•2•4•1•Updated Jul 6, 2026Jul 6, 2026

    • derotation

      Public
      Derotate images acquired via multiphoton calcium imaging
      neurosciencecalcium-imagingneuroscience-methods
      neurosciencecalcium-imagingneuroscience-methods
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•17•5•4•Updated Jul 6, 2026Jul 6, 2026

    • slides-flatiron-fens-2026

      Public
      NIU talk at the Flatiron CCN Software Workshop at FENS Forum, July 2026
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 2, 2026Jul 2, 2026

    • slides-fls-robotics-automation

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •279•3•0•1•Updated May 23, 2026May 23, 2026
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