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    235 repositories

    • sample_uploader

      Public
      Python
      •
      MIT License
      •7•0•0•4•Updated Apr 13, 2026Apr 13, 2026

    • KBDatalakeApps

      Public
      Apps designed for generating insights into user data in KBase using KBase Datalake
      Python
      •
      MIT License
      •3•0•1•0•Updated Mar 15, 2026Mar 15, 2026

    • sketch_service

      Public
      Service that returns similar genomes from a given assembly/genome ID
      Python
      •
      MIT License
      •3•0•0•18•Updated Mar 1, 2026Mar 1, 2026

    • KBDatalakeDashboard

      Public
      Dashboard for visualizing data in the Genome Datatables object
      Python
      •1•0•0•0•Updated Feb 22, 2026Feb 22, 2026

    • RAST_SDK

      Public
      Perl
      •
      MIT License
      •18•1•1•3•Updated Feb 13, 2026Feb 13, 2026

    • kb_djornl

      Public
      A KBase module wrapper and visualization for RWR tools which use the random walk with restart method on multiplex coexpression networks representing genes (node…
      Python
      •
      MIT License
      •5•4•0•0•Updated Jan 7, 2026Jan 7, 2026

    • kb_nanoplot

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • kb_kaiju

      Public
      Python
      •
      MIT License
      •8•0•0•2•Updated Dec 8, 2025Dec 8, 2025

    • kb_gtdbtk

      Public
      GTDB-Tk App
      Python
      •
      MIT License
      •10•4•7•3•Updated Dec 2, 2025Dec 2, 2025

    • KBAnnotationApps

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • kb_bedtools

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Oct 21, 2025Oct 21, 2025

    • kb_phylogenomics

      Public
      Python
      •
      MIT License
      •6•2•2•0•Updated Oct 21, 2025Oct 21, 2025

    • GenericsUtil

      Public
      Utilities to import and map KBase Generic objects.
      Java
      •
      MIT License
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • kb_quast

      Public
      KBase wrapper for the QUAST assembly quality assessment tool.
      Python
      •
      MIT License
      •9•0•0•2•Updated Oct 8, 2025Oct 8, 2025

    • GenomeFileUtil

      Public
      Python
      •
      MIT License
      •14•0•3•2•Updated Sep 22, 2025Sep 22, 2025

    • kb_Msuite

      Public
      Python
      •
      MIT License
      •11•1•1•1•Updated Sep 9, 2025Sep 9, 2025

    • kb_MaSuRCA

      Public
      This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)
      Python
      •
      MIT License
      •3•1•0•0•Updated Sep 2, 2025Sep 2, 2025

    • kb_cutadapt

      Public
      KBase wrapper for the cutadapt tool
      Python
      •
      MIT License
      •5•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • kb_stringtie

      Public
      Module for running the StringTie application (http://ccb.jhu.edu/software/stringtie/index.shtml)
      Python
      •
      MIT License
      •9•2•1•1•Updated Sep 2, 2025Sep 2, 2025

    • kb_SPAdes

      Public
      SPAdes wrapper
      Python
      •
      MIT License
      •16•0•1•3•Updated Jul 28, 2025Jul 28, 2025

    • BBTools

      Public
      Python
      •
      MIT License
      •4•5•1•1•Updated Jul 16, 2025Jul 16, 2025

    • kb_lighter

      Public
      First KBase App from ground up
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • DataFileUtil

      Public
      Python
      •
      MIT License
      •11•0•10•4•Updated May 26, 2025May 26, 2025

    • kb_unicycler

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • kb_ObjectInfo

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Apr 10, 2025Apr 10, 2025

    • KBaseReport

      Public
      Save plain text, HTML documents, and files as output from a KBase app
      Python
      •
      MIT License
      •9•0•1•0•Updated Mar 6, 2025Mar 6, 2025

    • kb_trimmomatic

      Public
      Python
      •
      MIT License
      •11•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • kb_fasttree

      Public
      Python
      •
      MIT License
      •2•0•0•8•Updated Nov 1, 2024Nov 1, 2024

    • StaticNarrative

      Public
      A dynamic service for creating and managing Static Narratives
      Python
      •
      MIT License
      •3•1•0•3•Updated Sep 1, 2024Sep 1, 2024

    • NarrativeService

      Public
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 23, 2024Aug 23, 2024
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